C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protocadherin 11 Y-linked
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000099715 PCDH11Y 9606 + Y:5000226-5742224 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000215473 PCDH11Y-005 5056088-5101437 protein_coding
  ENST00000333703 PCDH11Y-002 5000226-5105444 protein_coding
  ENST00000362095 PCDH11Y-003 5056090-5104700 protein_coding
  ENST00000400457 PCDH11Y-001 5056090-5742224 protein_coding
  ENST00000620615 PCDH11Y-006 5000390-5031947 processed_transcript
  ENST00000621505 PCDH11Y-007 5000400-5057088 protein_coding
  ENST00000622698 PCDH11Y-004 5000296-5105459 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000215473ENST00000333703ENST00000362095ENST00000400457ENST00000622698
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000215473 N/A N/A N/A N/A N/A N/A N/A 0.224±0.00 N/A N/A N/A N/A N/A
ENST00000333703 N/A N/A N/A N/A 0.168±0.00 0.015±0.00 0.028±0.00 0.004±0.00 N/A 0.016±0.00 0.078±0.02 0.019±0.00 N/A
ENST00000362095 N/A N/A 0.725±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000400457 N/A N/A 0.006±0.00 N/A 0.013±0.01 N/A N/A N/A N/A N/A N/A 0.049±0.00 0.004±0.00
ENST00000622698 0.024±0.00 0.053±0.00 0.036±0.00 0.007±0.00 0.022±0.00 0.009±0.00 N/A N/A 0.012±0.00 N/A 0.002±0.00 0.128±0.07 0.031±0.02

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000033556 PCDH11Y protocadherin 11 Y-linked protein_coding Danio_rerio
ENSMUSG00000034755 Pcdh11x protocadherin 11 X-linked protein_coding Mus_musculus

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