C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protocadherin 11 X-linked
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034755 Pcdh11x 10090 + X:120290259-120910619 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000050239 Pcdh11x-201 120290259-120906344 protein_coding
  ENSMUST00000113358 Pcdh11x-001 120290259-120910619 protein_coding
  ENSMUST00000113364 Pcdh11x-202 120290403-120906344 protein_coding
  ENSMUST00000155223 Pcdh11x-002 120401364-120906344 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000050239ENSMUST00000113358ENSMUST00000113364ENSMUST00000155223
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000050239 0.034±0.03 0.129±0.00 N/A N/A 0.077±0.05 0.024±0.00 N/A 0.007±0.00 0.009±0.01 N/A N/A 0.258±0.14 0.008±0.00 0.029±0.02
ENSMUST00000113358 0.021±0.00 N/A 0.011±0.00 0.835±0.28 0.015±0.00 N/A 0.012±0.00 N/A 0.008±0.00 N/A 0.005±0.00 0.062±0.05 0.003±0.00 0.013±0.01
ENSMUST00000113364 0.135±0.06 0.122±0.00 0.039±0.00 N/A N/A N/A N/A N/A 0.007±0.00 0.027±0.01 0.006±0.00 0.129±0.14 N/A 0.023±0.00
ENSMUST00000155223 0.134±0.06 0.097±0.06 0.046±0.00 N/A 0.044±0.03 0.046±0.01 0.022±0.01 0.020±0.01 0.021±0.01 0.066±0.04 0.016±0.01 0.246±0.15 N/A 0.034±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007B8 CIL_0007B8_0002 CGP X:119927196-120910619

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000033556 PCDH11Y protocadherin 11 Y-linked protein_coding Danio_rerio
ENSG00000099715 PCDH11Y protocadherin 11 Y-linked protein_coding Homo_sapiens
ENSG00000102290 PCDH11X protocadherin 11 X-linked protein_coding Homo_sapiens
ENSG00000279279 PCDH11Y protein_coding Homo_sapiens
ENSG00000279870 PCDH11Y protein_coding Homo_sapiens
ENSG00000280342 PCDH11Y protocadherin 11 Y-linked protein_coding Homo_sapiens

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