C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAN binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000099901 RANBP1 9606 + 22:20115938-20127357 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000331821 RANBP1-015 20117548-20127181 protein_coding
  ENST00000402752 RANBP1-001 20117424-20127355 protein_coding
  ENST00000411892 RANBP1-012 20117557-20125488 protein_coding
  ENST00000416427 RANBP1-006 20117782-20122421 protein_coding
  ENST00000418705 RANBP1-009 20117953-20127035 protein_coding
  ENST00000421656 RANBP1-007 20117875-20122421 protein_coding
  ENST00000423859 RANBP1-008 20117934-20126627 protein_coding
  ENST00000430524 RANBP1-201 20115938-20127357 protein_coding
  ENST00000432879 RANBP1-004 20115938-20122377 protein_coding
  ENST00000435265 RANBP1-002 20115938-20127181 nonsense_mediated_decay
  ENST00000448394 RANBP1-011 20122607-20127353 processed_transcript
  ENST00000467920 RANBP1-013 20117653-20119529 processed_transcript
  ENST00000486575 RANBP1-003 20124139-20127181 retained_intron
  ENST00000488484 RANBP1-005 20117524-20122684 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000331821ENST00000402752ENST00000418705ENST00000430524ENST00000448394
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000331821 14.224±0.00 N/A 5.490±0.00 24.058±6.53 12.774±0.00 9.390±2.79 4.437±1.87 17.604±7.34 13.085±7.17 27.910±0.00 2.410±0.00 55.671±24.91 43.499±11.19 45.906±14.58
ENST00000402752 18.248±0.00 40.166±0.00 2.749±0.00 17.806±9.78 23.587±0.00 10.466±4.77 6.926±0.00 12.348±4.16 9.601±5.75 10.481±5.09 7.951±6.47 31.021±19.00 28.730±4.37 31.431±1.98
ENST00000418705 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 29.374±0.00 N/A N/A
ENST00000430524 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.793±0.00 N/A N/A N/A
ENST00000448394 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 31.090±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003KS CIL_0003KS_0002 CGP 22:20080232-20117392

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005092 TAS GDP-dissociation inhibitor activity
GO:0005096 IEA GTPase activator activity
GO:0005634 TAS nucleus
GO:0005635 TAS nuclear envelope
GO:0005737 TAS cytoplasm
GO:0005813 IEA centrosome
GO:0007051 IEA spindle organization
GO:0007165 TAS signal transduction
GO:0008536 TAS Ran GTPase binding
GO:0016032 TAS viral process
GO:0043547 IEA positive regulation of GTPase activity
GO:0046604 IEA positive regulation of mitotic centrosome separation
GO:0046907 IEA intracellular transport
GO:0050790 TAS regulation of catalytic activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014817 ranbp1 RAN binding protein 1 protein_coding Danio_rerio
ENSMUSG00000005732 Ranbp1 RAN binding protein 1 protein_coding Mus_musculus

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