C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAN binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000331821 RANBP1-015 ENSG00000099901 9606 + 22:20117548-20127181 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000331821
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000331821 14.224±0.00 5.490±0.00 24.058±6.53 12.774±0.00 9.390±2.79 4.437±1.87 17.604±7.34 13.085±7.17 27.910±0.00 2.410±0.00 55.671±24.91 43.499±11.19 45.906±14.58

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003KS CIL_0003KS_0002 CGP 22:20080232-20117392

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005092 TAS GDP-dissociation inhibitor activity
GO:0005096 IEA GTPase activator activity
GO:0005634 TAS nucleus
GO:0005635 TAS nuclear envelope
GO:0005737 TAS cytoplasm
GO:0007165 TAS signal transduction
GO:0008536 TAS Ran GTPase binding
GO:0016032 TAS viral process
GO:0043547 IEA positive regulation of GTPase activity
GO:0046907 IEA intracellular transport
GO:0050790 TAS regulation of catalytic activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000183528 RANBP1-001 protein_coding Mus_musculus 0 824
ENSMUST00000115645 Ranbp1-001 protein_coding Mus_musculus 0 824
ENSMUST00000185058 RANBP1-003 protein_coding Mus_musculus 0 701
ENSMUST00000052325 Ranbp1-003 protein_coding Mus_musculus 0 701
ENSMUST00000121155 Gm5391-001 processed_pseudogene Mus_musculus 0 588
ENSMUST00000184634 RANBP1-004 retained_intron Mus_musculus 0 477
ENSMUST00000123073 Ranbp1-004 retained_intron Mus_musculus 0 477
ENSMUST00000185140 RANBP1-002 processed_transcript Mus_musculus 0 374
ENSMUST00000134035 Ranbp1-002 processed_transcript Mus_musculus 0 374

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