C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAN binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000402752 RANBP1-001 ENSG00000099901 9606 + 22:20117424-20127355 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000402752
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000402752 18.248±0.00 40.166±0.00 2.749±0.00 17.806±9.78 23.587±0.00 10.466±4.77 6.926±0.00 12.348±4.16 9.601±5.75 10.481±5.09 7.951±6.47 31.021±19.00 28.730±4.37 31.431±1.98

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003KS CIL_0003KS_0002 CGP 22:20080232-20117392

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005092 TAS GDP-dissociation inhibitor activity
GO:0005096 IEA GTPase activator activity
GO:0005634 TAS nucleus
GO:0005635 TAS nuclear envelope
GO:0005737 TAS cytoplasm
GO:0007165 TAS signal transduction
GO:0008536 TAS Ran GTPase binding
GO:0016032 TAS viral process
GO:0043547 IEA positive regulation of GTPase activity
GO:0046907 IEA intracellular transport
GO:0050790 TAS regulation of catalytic activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000183528 RANBP1-001 protein_coding Mus_musculus 0 1088
ENSMUST00000115645 Ranbp1-001 protein_coding Mus_musculus 0 1088
ENSMUST00000185058 RANBP1-003 protein_coding Mus_musculus 0 857
ENSMUST00000052325 Ranbp1-003 protein_coding Mus_musculus 0 857
ENSMUST00000121155 Gm5391-001 processed_pseudogene Mus_musculus 0 603
ENSMUST00000184634 RANBP1-004 retained_intron Mus_musculus 0 477
ENSMUST00000123073 Ranbp1-004 retained_intron Mus_musculus 0 477
ENSMUST00000185140 RANBP1-002 processed_transcript Mus_musculus 0 374
ENSMUST00000134035 Ranbp1-002 processed_transcript Mus_musculus 0 374
ENSMUST00000183889 TRMT2A-003 retained_intron Mus_musculus 3e-28 130
ENSMUST00000127239 Trmt2a-003 retained_intron Mus_musculus 3e-28 130

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