C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SH3-domain binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100092 SH3BP1 9606 + 22:37634654-37666932 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000357436 SH3BP1-001 37639475-37656117 protein_coding
  ENST00000417536 SH3BP1-002 37634654-37656042 nonsense_mediated_decay
  ENST00000451997 SH3BP1-008 37639693-37666932 nonsense_mediated_decay
  ENST00000459646 SH3BP1-004 37643714-37645055 retained_intron
  ENST00000466097 SH3BP1-005 37646768-37650778 retained_intron
  ENST00000469947 SH3BP1-003 37640386-37656041 retained_intron
  ENST00000471650 SH3BP1-007 37643455-37647506 retained_intron
  ENST00000495174 SH3BP1-006 37641382-37647291 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000357436ENST00000451997ENST00000459646ENST00000466097ENST00000469947ENST00000471650ENST00000495174
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000357436 0.879±0.00 6.197±0.00 0.726±0.00 2.316±0.85 N/A 0.782±0.47 N/A 7.300±0.00 5.986±3.53 12.809±2.80 3.470±1.26
ENST00000451997 0.573±0.00 3.030±0.00 0.974±0.45 N/A 0.040±0.00 0.764±0.00 N/A N/A 2.850±0.00 3.260±0.00 N/A
ENST00000459646 N/A N/A 2.698±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466097 N/A N/A N/A N/A N/A N/A N/A 0.991±0.00 N/A N/A N/A
ENST00000469947 N/A N/A N/A N/A N/A N/A 0.217±0.00 N/A N/A N/A N/A
ENST00000471650 N/A N/A N/A N/A 0.191±0.00 N/A N/A N/A 1.584±0.00 N/A N/A
ENST00000495174 N/A N/A N/A N/A N/A N/A N/A 0.463±0.00 5.060±3.18 6.142±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00040D CIL_00040D_0001 CGP 22:37608475-37666932

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005096 IEA GTPase activator activity
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005737 IEA cytoplasm
GO:0007165 IEA signal transduction
GO:0017124 IEA SH3 domain binding
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078119 sh3bp1 SH3-domain binding protein 1 protein_coding Danio_rerio
ENSMUSG00000022436 Sh3bp1 SH3-domain binding protein 1 protein_coding Mus_musculus

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