C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SH3-domain binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000357436 SH3BP1-001 ENSG00000100092 9606 + 22:37639475-37656117 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLungOvaryPlacentaTestisENST00000357436
Transcript ID Adipose Adrenal Breast Colon Kidney Lung Ovary Placenta Testis
ENST00000357436 0.879±0.00 6.197±0.00 0.726±0.00 2.316±0.85 0.782±0.47 7.300±0.00 5.986±3.53 12.809±2.80 3.470±1.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00040D CIL_00040D_0001 CGP 22:37608475-37666932

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005096 IEA GTPase activator activity
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005737 IEA cytoplasm
GO:0007165 IEA signal transduction
GO:0017124 IEA SH3 domain binding
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001226 Sh3bp1-001 protein_coding Mus_musculus 0 1993
ENSMUST00000109698 Sh3bp1-003 protein_coding Mus_musculus 0 1812
ENSMUST00000132047 Sh3bp1-006 nonsense_mediated_decay Mus_musculus 0 1812
ENSMUST00000061239 Sh3bp1-002 protein_coding Mus_musculus 0 1812
ENSMUST00000134703 Sh3bp1-007 processed_transcript Mus_musculus 0 1574
ENSMUST00000151146 Sh3bp1-005 nonsense_mediated_decay Mus_musculus 0 1081
ENSMUST00000148893 Sh3bp1-004 protein_coding Mus_musculus 0 403
ENSMUST00000025250 Bag6-201 protein_coding Mus_musculus 0.00001 57
ENSMUST00000173550 Bag6-004 protein_coding Mus_musculus 0.00001 57
ENSMUST00000174281 Bag6-005 protein_coding Mus_musculus 0.00001 57
ENSMUST00000172571 Bag6-002 protein_coding Mus_musculus 0.00001 57
ENSMUST00000166426 Bag6-001 protein_coding Mus_musculus 0.00001 57

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