C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00040D_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000100083-ENSG00000100092 CGP 9606 22:37608475-37666932
GeneTranscriptPositionBiotype
ENSG00000100083 (GGA1)
golgi-associated, gamma adaptin ear containing, ARF binding protein 1 		ENST00000325180 (GGA1-024) 37608845-37633564 protein_coding
ENST00000326597 (GGA1-018) 37612536-37620267 protein_coding
ENST00000343632 (GGA1-001) 37608475-37633564 protein_coding
ENST00000381756 (GGA1-002) 37608725-37632711 protein_coding
ENST00000405147 (GGA1-007) 37608834-37620044 protein_coding
ENST00000406772 (GGA1-003) 37609040-37633563 protein_coding
ENST00000411501 (GGA1-008) 37608960-37620275 protein_coding
ENST00000413251 (GGA1-015) 37613970-37621632 protein_coding
ENST00000423024 (GGA1-019) 37614133-37621632 protein_coding
ENST00000429218 (GGA1-010) 37608835-37621631 protein_coding
ENST00000431745 (GGA1-011) 37609060-37618515 protein_coding
ENST00000439161 (GGA1-009) 37608935-37620332 protein_coding
ENST00000447515 (GGA1-017) 37609040-37618546 protein_coding
ENST00000449944 (GGA1-016) 37608948-37623564 protein_coding
ENST00000453208 (GGA1-012) 37608977-37620816 protein_coding
ENST00000460957 (GGA1-022) 37630668-37632677 retained_intron
ENST00000463672 (GGA1-023) 37629462-37630299 retained_intron
ENST00000475445 (GGA1-006) 37623829-37627162 retained_intron
ENST00000481613 (GGA1-021) 37620854-37623916 retained_intron
ENST00000484804 (GGA1-013) 37609066-37614274 processed_transcript
ENST00000488672 (GGA1-014) 37610142-37614195 processed_transcript
ENST00000489772 (GGA1-005) 37608830-37618146 retained_intron
ENST00000491295 (GGA1-020) 37618403-37620249 retained_intron
ENSG00000100092 (SH3BP1)
SH3-domain binding protein 1 		ENST00000357436 (SH3BP1-001) 37639475-37656117 protein_coding
ENST00000417536 (SH3BP1-002) 37634654-37656042 nonsense_mediated_decay
ENST00000451997 (SH3BP1-008) 37639693-37666932 nonsense_mediated_decay
ENST00000459646 (SH3BP1-004) 37643714-37645055 retained_intron
ENST00000466097 (SH3BP1-005) 37646768-37650778 retained_intron
ENST00000469947 (SH3BP1-003) 37640386-37656041 retained_intron
ENST00000471650 (SH3BP1-007) 37643455-37647506 retained_intron
ENST00000495174 (SH3BP1-006) 37641382-37647291 processed_transcript
ENSG00000233360 (Z83844.1)
 ENST00000456099 (Z83844.1-001) 37641832-37658377 antisense
ENSG00000241360 (PDXP)
pyridoxal (pyridoxine, vitamin B6) phosphatase 		ENST00000215904 (PDXP-001) 37658727-37666934 protein_coding
ENST00000403251 (PDXP-002) 37664911-37666932 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_00040D_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000033128-ENSMUSG00000022436 CGP 10090 15:78877190-78919517
GeneTranscriptPositionBiotype
ENSMUSG00000022436 (Sh3bp1)
SH3-domain binding protein 1 		ENSMUST00000001226 (Sh3bp1-001) 78899768-78912047 protein_coding
ENSMUST00000061239 (Sh3bp1-002) 78899768-78912051 protein_coding
ENSMUST00000089378 (Sh3bp1-201) 78913919-78919517 protein_coding
ENSMUST00000109698 (Sh3bp1-003) 78899768-78912051 protein_coding
ENSMUST00000132047 (Sh3bp1-006) 78899768-78912051 nonsense_mediated_decay
ENSMUST00000134703 (Sh3bp1-007) 78899667-78919032 processed_transcript
ENSMUST00000148893 (Sh3bp1-004) 78900428-78902926 protein_coding
ENSMUST00000151146 (Sh3bp1-005) 78899768-78912051 nonsense_mediated_decay
ENSMUSG00000033128 (Gga1)
golgi associated, gamma adaptin ear containing, ARF binding protein 1 		ENSMUST00000041587 (Gga1-201) 78877190-78894585 protein_coding
ENSMUSG00000084864 (1700027A07Rik)
RIKEN cDNA 1700027A07 gene 		ENSMUST00000150472 (1700027A07Rik-001) 78911966-78913660 antisense
ENSMUSG00000099267 (Mir6955)
microRNA 6955 		ENSMUST00000183370 (Mir6955-201) 78891840-78891913 miRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00040D_0001ENSG00000100083ENST00000325180ENST00000343632ENST00000381756ENST00000406772ENST00000449944ENST00000460957ENST00000463672ENST00000481613ENST00000489772ENSG00000100092ENST00000357436ENST00000451997ENST00000459646ENST00000466097ENST00000469947ENST00000471650ENST00000495174ENSG00000233360ENST00000456099ENSG00000241360ENST00000215904ENST00000403251CIL_00040D_0002ENSMUSG00000022436ENSMUST00000001226ENSMUST00000061239ENSMUST00000089378ENSMUST00000109698ENSMUST00000151146ENSMUSG00000033128ENSMUST00000041587ENSMUSG00000084864ENSMUST00000150472ENSMUSG00000099267ENSMUST00000183370
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000100083 ENST00000325180 5.773±0.00 6.050±0.00 N/A 2.605±1.97 5.030±0.00 5.754±0.00 1.927±1.66 5.153±4.88 2.016±0.00 5.724±0.00 12.081±0.00 4.042±2.93 4.385±1.35 24.676±3.03
ENST00000326597 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000343632 1.861±0.00 3.665±0.00 N/A 4.964±0.00 3.294±0.00 N/A 3.470±0.00 7.109±0.00 N/A 2.036±1.41 6.161±0.00 11.525±5.91 2.366±0.36 34.806±0.00
ENST00000381756 5.325±0.00 N/A 1.345±0.00 2.904±2.14 1.008±0.00 1.805±0.00 N/A 1.212±0.00 N/A 1.172±0.00 N/A 8.313±0.00 N/A N/A
ENST00000405147 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000406772 N/A 3.071±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.929±0.00
ENST00000411501 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000413251 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000423024 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000429218 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000431745 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000439161 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000447515 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000449944 N/A N/A N/A N/A 2.158±0.00 N/A N/A N/A 1.374±0.00 N/A N/A N/A N/A N/A
ENST00000453208 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460957 N/A N/A N/A N/A 4.614±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463672 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.162±0.00 N/A N/A N/A
ENST00000475445 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481613 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.199±0.00 N/A N/A N/A
ENST00000484804 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488672 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489772 N/A N/A N/A 0.608±0.00 0.856±0.00 2.774±0.00 N/A 1.020±0.00 N/A N/A N/A 1.530±0.00 N/A N/A
ENST00000491295 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000100092 ENST00000357436 0.879±0.00 6.197±0.00 N/A N/A 0.726±0.00 2.316±0.85 N/A 0.782±0.47 N/A 7.300±0.00 N/A 5.986±3.53 12.809±2.80 3.470±1.26
ENST00000417536 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000451997 0.573±0.00 3.030±0.00 N/A N/A 0.974±0.45 N/A 0.040±0.00 0.764±0.00 N/A N/A N/A 2.850±0.00 3.260±0.00 N/A
ENST00000459646 N/A N/A N/A N/A 2.698±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466097 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.991±0.00 N/A N/A N/A N/A
ENST00000469947 N/A N/A N/A N/A N/A N/A N/A N/A 0.217±0.00 N/A N/A N/A N/A N/A
ENST00000471650 N/A N/A N/A N/A N/A N/A 0.191±0.00 N/A N/A N/A N/A 1.584±0.00 N/A N/A
ENST00000495174 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.463±0.00 N/A 5.060±3.18 6.142±0.00 N/A
ENSG00000233360 ENST00000456099 0.998±0.00 4.230±0.00 N/A N/A 0.691±0.04 1.032±0.00 N/A N/A 0.505±0.00 N/A N/A N/A 5.155±0.00 N/A
ENSG00000241360 ENST00000215904 2.470±0.00 4.445±0.00 0.091±0.00 43.574±33.47 3.163±0.00 9.754±0.00 10.742±0.00 6.569±0.00 34.195±0.00 7.213±0.00 4.646±3.93 10.323±5.13 5.118±0.00 16.782±6.06
ENST00000403251 N/A N/A N/A 5.967±0.00 N/A N/A N/A 3.869±0.00 N/A N/A N/A 9.371±0.00 N/A 16.060±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022436 ENSMUST00000001226 9.576±4.60 6.356±1.00 10.872±0.44 N/A 31.592±5.77 6.957±1.39 1.715±0.71 4.280±0.70 7.012±6.85 14.068±2.40 0.707±0.58 12.047±5.18 4.520±2.23 0.738±0.12
ENSMUST00000061239 N/A N/A N/A N/A N/A 2.008±0.00 N/A 1.090±0.00 N/A 4.974±0.00 N/A 7.052±1.43 N/A N/A
ENSMUST00000089378 4.476±0.80 8.374±2.58 N/A 49.421±9.84 8.636±1.73 2.011±0.26 0.887±0.09 1.003±0.22 4.371±4.93 N/A 2.053±0.70 8.668±0.38 3.440±1.94 3.369±0.71
ENSMUST00000109698 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.499±0.00 N/A N/A N/A
ENSMUST00000132047 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134703 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148893 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151146 N/A N/A N/A N/A N/A N/A 0.767±0.15 1.240±0.00 N/A N/A N/A N/A N/A N/A
ENSMUSG00000033128 ENSMUST00000041587 19.870±2.81 29.025±2.46 23.127±1.21 18.252±5.27 21.518±10.75 29.862±6.15 13.080±1.44 15.307±3.28 11.433±1.98 28.670±4.26 17.668±1.54 23.343±6.90 16.443±3.04 26.155±9.85
ENSMUSG00000084864 ENSMUST00000150472 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.787±1.23
ENSMUSG00000099267 ENSMUST00000183370 28132.600±0.00 N/A N/A N/A N/A 97492.703±0.00 N/A N/A N/A N/A N/A 303.137±0.00 N/A N/A

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