C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SH3-domain binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000451997 SH3BP1-008 ENSG00000100092 9606 + 22:37639693-37666932 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastHeartKidneyOvaryPlacentaENST00000451997
Transcript ID Adipose Adrenal Breast Heart Kidney Ovary Placenta
ENST00000451997 0.573±0.00 3.030±0.00 0.974±0.45 0.040±0.00 0.764±0.00 2.850±0.00 3.260±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00040D CIL_00040D_0001 CGP 22:37608475-37666932

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000134703 Sh3bp1-007 processed_transcript Mus_musculus 0 2045
ENSMUST00000109698 Sh3bp1-003 protein_coding Mus_musculus 0 1574
ENSMUST00000132047 Sh3bp1-006 nonsense_mediated_decay Mus_musculus 0 1574
ENSMUST00000061239 Sh3bp1-002 protein_coding Mus_musculus 0 1574
ENSMUST00000001226 Sh3bp1-001 protein_coding Mus_musculus 0 1574
ENSMUST00000151146 Sh3bp1-005 nonsense_mediated_decay Mus_musculus 0 1081
ENSMUST00000089378 Sh3bp1-201 protein_coding Mus_musculus 0 399
ENSMUST00000148893 Sh3bp1-004 protein_coding Mus_musculus 0 346
ENSMUST00000025250 Bag6-201 protein_coding Mus_musculus 0.00002 57
ENSMUST00000173550 Bag6-004 protein_coding Mus_musculus 0.00002 57
ENSMUST00000174281 Bag6-005 protein_coding Mus_musculus 0.00002 57
ENSMUST00000172571 Bag6-002 protein_coding Mus_musculus 0.00002 57
ENSMUST00000166426 Bag6-001 protein_coding Mus_musculus 0.00002 57

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