C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: glycine C-acetyltransferase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100116 GCAT 9606 + 22:37807905-37817176 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000248924 GCAT-001 37807912-37816899 protein_coding
  ENST00000323205 GCAT-002 37807905-37817176 protein_coding
  ENST00000415371 GCAT-005 37807923-37813485 processed_transcript
  ENST00000426858 GCAT-006 37807938-37815208 nonsense_mediated_decay
  ENST00000445195 GCAT-004 37807916-37813300 protein_coding
  ENST00000451984 GCAT-003 37808014-37813609 protein_coding
  ENST00000478203 GCAT-007 37807934-37813076 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000248924ENST00000323205ENST00000426858ENST00000445195
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000248924 3.839±0.00 1.959±0.00 2.206±0.00 7.173±2.91 1.408±1.07 2.768±2.04 4.508±2.42 8.478±0.82 5.950±4.69 1.550±0.85 5.924±1.24 8.955±2.61 3.138±1.31 6.512±0.17
ENST00000323205 1.083±0.00 1.045±0.00 N/A N/A 0.552±0.00 N/A 2.026±0.00 2.299±0.00 N/A N/A N/A 1.009±0.00 0.745±0.00 0.994±0.00
ENST00000426858 N/A N/A N/A N/A N/A 0.708±0.00 N/A N/A N/A N/A N/A N/A N/A 3.898±0.00
ENST00000445195 N/A N/A N/A N/A N/A 0.405±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099H CIL_00099H_0001 VISTA 22:37683926-38284300
CIL_0008KJ CIL_0008KJ_0001 VISTA 22:37685616-38286450
CIL_0008BX CIL_0008BX_0001 VISTA 22:37696030-38296592
CIL_0008KA CIL_0008KA_0001 VISTA 22:37698338-38299192
CIL_00082J CIL_00082J_0001 VISTA 22:37733233-38334508
CIL_0008C1 CIL_0008C1_0001 VISTA 22:37746133-38346872
CIL_00082K CIL_00082K_0001 VISTA 22:37750385-38350990
CIL_000409 CIL_000409_0001 CGP 22:37805093-37817176

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0005634 IDA nucleus
GO:0005739 IDA mitochondrion
GO:0006520 NAS cellular amino acid metabolic process
GO:0008152 IEA metabolic process
GO:0008890 NAS:IEA glycine C-acetyltransferase activity
GO:0009058 IEA biosynthetic process
GO:0019518 IEA L-threonine catabolic process to glycine
GO:0030170 IEA pyridoxal phosphate binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005643 gcat glycine C-acetyltransferase protein_coding Danio_rerio
ENSMUSG00000006378 Gcat glycine C-acetyltransferase (2-amino-3-ketobutyrate-coenzyme A ligase) protein_coding Mus_musculus

Loading