C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glycine C-acetyltransferase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000248924 GCAT-001 ENSG00000100116 9606 + 22:37807912-37816899 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000248924
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000248924 3.839±0.00 1.959±0.00 2.206±0.00 7.173±2.91 1.408±1.07 2.768±2.04 4.508±2.42 8.478±0.82 5.950±4.69 1.550±0.85 5.924±1.24 8.955±2.61 3.138±1.31 6.512±0.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099H CIL_00099H_0001 VISTA 22:37683926-38284300
CIL_0008KJ CIL_0008KJ_0001 VISTA 22:37685616-38286450
CIL_0008BX CIL_0008BX_0001 VISTA 22:37696030-38296592
CIL_0008KA CIL_0008KA_0001 VISTA 22:37698338-38299192
CIL_00082J CIL_00082J_0001 VISTA 22:37733233-38334508
CIL_0008C1 CIL_0008C1_0001 VISTA 22:37746133-38346872
CIL_00082K CIL_00082K_0001 VISTA 22:37750385-38350990
CIL_000409 CIL_000409_0001 CGP 22:37805093-37817176

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0005739 IDA mitochondrion
GO:0006520 NAS cellular amino acid metabolic process
GO:0008152 IEA metabolic process
GO:0008890 NAS:IEA glycine C-acetyltransferase activity
GO:0009058 IEA biosynthetic process
GO:0019518 IEA L-threonine catabolic process to glycine
GO:0030170 IEA pyridoxal phosphate binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000006544 Gcat-201 protein_coding Mus_musculus 0 1452
ENSMUST00000171999 Gcat-203 protein_coding Mus_musculus 0 1240

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