C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glycine C-acetyltransferase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000323205 GCAT-002 ENSG00000100116 9606 + 22:37807905-37817176 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastHeartKidneyOvaryPlacentaTestisENST00000323205
Transcript ID Adipose Adrenal Breast Heart Kidney Ovary Placenta Testis
ENST00000323205 1.083±0.00 1.045±0.00 0.552±0.00 2.026±0.00 2.299±0.00 1.009±0.00 0.745±0.00 0.994±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099H CIL_00099H_0001 VISTA 22:37683926-38284300
CIL_0008KJ CIL_0008KJ_0001 VISTA 22:37685616-38286450
CIL_0008BX CIL_0008BX_0001 VISTA 22:37696030-38296592
CIL_0008KA CIL_0008KA_0001 VISTA 22:37698338-38299192
CIL_00082J CIL_00082J_0001 VISTA 22:37733233-38334508
CIL_0008C1 CIL_0008C1_0001 VISTA 22:37746133-38346872
CIL_00082K CIL_00082K_0001 VISTA 22:37750385-38350990
CIL_000409 CIL_000409_0001 CGP 22:37805093-37817176

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0005739 IDA mitochondrion
GO:0006520 NAS cellular amino acid metabolic process
GO:0008152 IEA metabolic process
GO:0008890 NAS:IEA glycine C-acetyltransferase activity
GO:0009058 IEA biosynthetic process
GO:0019518 IEA L-threonine catabolic process to glycine
GO:0030170 IEA pyridoxal phosphate binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000006544 Gcat-201 protein_coding Mus_musculus 0 1275
ENSMUST00000171999 Gcat-203 protein_coding Mus_musculus 0 1086

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