C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polymerase (RNA) II (DNA directed) polypeptide F
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100142 POLR2F 9606 + 22:37952607-38041915 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000333418 POLR2F-011 37986193-38026685 protein_coding
  ENST00000405557 POLR2F-010 37953711-38025768 protein_coding
  ENST00000407936 POLR2F-009 37953697-38041106 protein_coding
  ENST00000427034 POLR2F-012 37986199-38026637 protein_coding
  ENST00000442738 POLR2F-001 37953663-37969312 protein_coding
  ENST00000443002 POLR2F-003 37953699-37988334 nonsense_mediated_decay
  ENST00000460648 POLR2F-002 37953697-37967376 protein_coding
  ENST00000470701 POLR2F-007 37953727-37967801 protein_coding
  ENST00000483713 POLR2F-005 37953699-37967798 nonsense_mediated_decay
  ENST00000484894 POLR2F-008 37952607-37972298 processed_transcript
  ENST00000488684 POLR2F-004 37953699-37967293 protein_coding
  ENST00000492213 POLR2F-006 37953699-37967694 protein_coding
  ENST00000606538 POLR2F-013 37953711-37967560 protein_coding
  ENST00000608713 POLR2F-014 38040304-38041915 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000405557ENST00000407936ENST00000442738ENST00000470701ENST00000483713ENST00000492213
Transcript ID Adrenal Bladder Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000405557 N/A N/A N/A N/A 8.145±0.00 N/A 5.463±0.00 N/A N/A 38.932±0.00 44.595±0.00
ENST00000407936 N/A N/A N/A N/A N/A N/A N/A N/A 89.079±0.00 29.421±14.89 48.089±0.00
ENST00000442738 N/A 0.760±0.00 2.451±0.00 0.905±0.00 N/A N/A N/A 1.067±0.00 N/A N/A N/A
ENST00000470701 44.817±0.00 N/A 49.834±0.00 12.038±8.46 26.344±11.81 24.541±0.00 25.438±0.00 19.714±0.00 74.831±12.13 42.557±1.31 81.480±0.00
ENST00000483713 N/A N/A N/A N/A N/A N/A N/A 7.212±0.00 22.640±17.60 14.032±0.00 N/A
ENST00000492213 N/A 3.190±0.00 N/A 11.293±8.22 N/A 24.940±0.00 N/A N/A 53.074±0.00 46.451±0.00 48.772±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099H CIL_00099H_0001 VISTA 22:37683926-38284300
CIL_0008KJ CIL_0008KJ_0001 VISTA 22:37685616-38286450
CIL_0008BX CIL_0008BX_0001 VISTA 22:37696030-38296592
CIL_0008KA CIL_0008KA_0001 VISTA 22:37698338-38299192
CIL_00082J CIL_00082J_0001 VISTA 22:37733233-38334508
CIL_0008C1 CIL_0008C1_0001 VISTA 22:37746133-38346872
CIL_00082K CIL_00082K_0001 VISTA 22:37750385-38350990
CIL_0008MM CIL_0008MM_0001 VISTA 22:37872841-38473542
CIL_0006F9 CIL_0006F9_0002 CGP 22:37905657-37953669
CIL_0003QJ CIL_0003QJ_0001 CGP 22:37943050-38041915
CIL_0007CX CIL_0007CX_0001 CGP 22:37952607-38041915

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0001054 IBA RNA polymerase I activity
GO:0001055 IBA RNA polymerase II activity
GO:0001056 IBA RNA polymerase III activity
GO:0003677 IEA DNA binding
GO:0003899 IEA DNA-directed RNA polymerase activity
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005665 IDA DNA-directed RNA polymerase II, core complex
GO:0005666 IBA DNA-directed RNA polymerase III complex
GO:0005730 IDA nucleolus
GO:0005736 IBA DNA-directed RNA polymerase I complex
GO:0005829 TAS cytosol
GO:0006281 TAS DNA repair
GO:0006283 TAS transcription-coupled nucleotide-excision repair
GO:0006289 TAS nucleotide-excision repair
GO:0006351 IEA transcription, DNA-templated
GO:0006360 IBA transcription from RNA polymerase I promoter
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0006370 TAS 7-methylguanosine mRNA capping
GO:0006383 TAS transcription from RNA polymerase III promoter
GO:0006385 TAS transcription elongation from RNA polymerase III promoter
GO:0006386 TAS termination of RNA polymerase III transcription
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0032481 TAS positive regulation of type I interferon production
GO:0045087 TAS innate immune response
GO:0050434 TAS positive regulation of viral transcription

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036625 polr2f polymerase (RNA) II (DNA directed) polypeptide F protein_coding Danio_rerio
ENSMUSG00000033020 Polr2f polymerase (RNA) II (DNA directed) polypeptide F protein_coding Mus_musculus

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