C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: tetratricopeptide repeat domain 28
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000397906 TTC28-001 ENSG00000100154 9606 - 22:27978014-28679865 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartLungMuscleTestisENST00000397906
Transcript ID Heart Lung Muscle Testis
ENST00000397906 1.196±0.00 2.144±0.00 1.053±0.00 2.071±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009D3 CIL_0009D3_0001 VISTA 22:27542325-28143730
CIL_0008Y6 CIL_0008Y6_0001 VISTA 22:27751293-28353466

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005813 IEA centrosome
GO:0007067 IEA mitotic nuclear division
GO:0007346 IEA regulation of mitotic cell cycle
GO:0030496 IEA midbody

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000156290 Ttc28-001 protein_coding Mus_musculus 0 7293
ENSMUST00000040111 Ttc28-201 protein_coding Mus_musculus 0 6030
ENSMUST00000125470 Ttc28-003 retained_intron Mus_musculus 0 704
ENSMUST00000129017 Ttc28-005 retained_intron Mus_musculus 0 235
ENSMUST00000128584 Ttc28-004 processed_transcript Mus_musculus 0 231
ENSMUST00000143505 Ttc28-002 processed_transcript Mus_musculus 0 457

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