C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tetratricopeptide repeat domain 28
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000612946 TTC28-201 ENSG00000100154 9606 - 22:27978014-28306645 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000612946
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000612946 4.515±0.00 2.833±0.00 3.093±0.00 2.244±0.92 2.715±0.00 2.707±0.00 1.546±0.04 2.388±0.00 1.776±0.00 4.779±2.26 3.909±0.00 4.142±0.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009D3 CIL_0009D3_0001 VISTA 22:27542325-28143730
CIL_0008Y6 CIL_0008Y6_0001 VISTA 22:27751293-28353466

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000156290 Ttc28-001 protein_coding Mus_musculus 0 6813
ENSMUST00000040111 Ttc28-201 protein_coding Mus_musculus 0 6030
ENSMUST00000125470 Ttc28-003 retained_intron Mus_musculus 0 704
ENSMUST00000129017 Ttc28-005 retained_intron Mus_musculus 0 235
ENSMUST00000128584 Ttc28-004 processed_transcript Mus_musculus 0 231

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