C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA 2',3'-cyclic phosphate and 5'-OH ligase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000216038 RTCB-001 ENSG00000100220 9606 - 22:32387582-32412255 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000216038
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000216038 22.687±0.00 18.755±0.00 3.977±0.00 19.945±7.46 19.393±0.00 13.802±6.16 7.860±4.70 20.531±11.91 18.556±8.74 9.026±2.49 10.467±6.39 27.318±7.56 39.735±7.74 22.476±1.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002NK CIL_0002NK_0001 CGP 22:32387582-32464484

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001701 IEA in utero embryonic development
GO:0001890 IEA placenta development
GO:0003972 IDA RNA ligase (ATP) activity
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006388 IDA tRNA splicing, via endonucleolytic cleavage and ligation
GO:0006396 IEA RNA processing
GO:0008452 IEA RNA ligase activity
GO:0017166 IPI vinculin binding
GO:0044822 IDA poly(A) RNA binding
GO:0046872 IEA metal ion binding
GO:0072669 IDA tRNA-splicing ligase complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001834 Rtcb-001 protein_coding Mus_musculus 0 2132
ENSMUST00000139413 Rtcb-002 retained_intron Mus_musculus 0 569

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