C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: GTP binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100226 GTPBP1 9606 + 22:38705723-38738299 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000216044 GTPBP1-001 38705723-38733587 protein_coding
  ENST00000418601 GTPBP1-004 38705949-38721822 nonsense_mediated_decay
  ENST00000458073 GTPBP1-010 38726306-38738299 protein_coding
  ENST00000460605 GTPBP1-006 38725176-38726428 processed_transcript
  ENST00000461428 GTPBP1-015 38706118-38716240 retained_intron
  ENST00000462332 GTPBP1-002 38728256-38732239 retained_intron
  ENST00000470836 GTPBP1-011 38706520-38715962 protein_coding
  ENST00000475959 GTPBP1-007 38725807-38726388 retained_intron
  ENST00000484657 GTPBP1-003 38705742-38716867 protein_coding
  ENST00000484971 GTPBP1-016 38730613-38736184 nonsense_mediated_decay
  ENST00000487538 GTPBP1-017 38734324-38736175 nonsense_mediated_decay
  ENST00000488787 GTPBP1-005 38706511-38716669 protein_coding
  ENST00000489527 GTPBP1-018 38734325-38738295 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000216044
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000216044 19.850±0.00 14.061±0.00 12.231±9.86 8.371±5.18 9.249±6.18 1.161±0.00 1.999±0.00 19.098±16.82 13.506±11.56 13.910±6.91 13.570±2.87 16.315±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001ZY CIL_0001ZY_0001 CGP 22:38685543-38738299
CIL_0002XF CIL_0002XF_0001 CGP 22:38705723-38794143

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000177 ISS cytoplasmic exosome (RNase complex)
GO:0003924 ISS:IEA GTPase activity
GO:0005525 IEA GTP binding
GO:0005829 ISS cytosol
GO:0006184 ISS GTP catabolic process
GO:0006955 TAS immune response
GO:0007165 TAS signal transduction
GO:0016020 IDA membrane
GO:0044822 IDA poly(A) RNA binding
GO:0061014 ISS positive regulation of mRNA catabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042900 gtpbp1l GTP binding protein 1, like protein_coding Danio_rerio
ENSDARG00000053467 gtpbp1 GTP binding protein 1 protein_coding Danio_rerio
ENSMUSG00000042535 Gtpbp1 GTP binding protein 1 protein_coding Mus_musculus

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