C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SET binding factor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100241 SBF1 9606 - 22:50445000-50475025 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000348911 SBF1-003 50446806-50474942 protein_coding
  ENST00000380817 SBF1-001 50445000-50475024 protein_coding
  ENST00000390679 SBF1-201 50447142-50475025 protein_coding
  ENST00000399627 SBF1-008 50466431-50474849 retained_intron
  ENST00000418590 SBF1-005 50446810-50455377 protein_coding
  ENST00000470434 SBF1-004 50446826-50455989 retained_intron
  ENST00000473724 SBF1-006 50447083-50447609 retained_intron
  ENST00000476293 SBF1-007 50456589-50457347 processed_transcript
  ENST00000477234 SBF1-009 50466196-50467355 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000348911ENST00000380817ENST00000390679ENST00000418590
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000348911 4.338±0.00 7.417±0.00 N/A 8.163±0.00 5.139±2.38 N/A 5.200±0.00 N/A N/A 4.824±0.00 N/A 12.991±1.62 N/A 70.471±0.00
ENST00000380817 5.276±0.00 13.553±0.00 0.566±0.00 9.900±7.93 8.684±0.00 8.474±0.00 4.747±0.00 9.862±0.00 2.737±1.60 3.108±2.30 8.824±6.68 8.064±5.45 3.095±0.58 9.020±0.00
ENST00000390679 N/A N/A 1.534±0.00 8.101±3.11 1.890±0.00 1.688±0.00 1.730±0.00 N/A 1.859±0.00 N/A 4.268±0.00 4.405±1.11 6.501±2.59 60.448±0.00
ENST00000418590 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 45.914±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000V2 CIL_0000V2_0002 CGP 22:50309030-50445090
CIL_00024L CIL_00024L_0001 CGP 22:50343304-50475025
CIL_0000IR CIL_0000IR_0001 CGP 22:50445000-50486440

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0006470 TAS protein dephosphorylation
GO:0007283 IEA spermatogenesis
GO:0008138 TAS protein tyrosine/serine/threonine phosphatase activity
GO:0008219 IEA cell death
GO:0016021 TAS integral component of membrane
GO:0016311 IEA dephosphorylation
GO:0016791 IEA phosphatase activity
GO:0017112 IDA Rab guanyl-nucleotide exchange factor activity
GO:0032851 IDA positive regulation of Rab GTPase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062968 sbf1 SET binding factor 1 protein_coding Danio_rerio
ENSMUSG00000036529 Sbf1 SET binding factor 1 protein_coding Mus_musculus

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