C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SET binding factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000348911 SBF1-003 ENSG00000100241 9606 - 22:50446806-50474942 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartLungOvaryTestisENST00000348911
Transcript ID Adipose Adrenal Brain Breast Heart Lung Ovary Testis
ENST00000348911 4.338±0.00 7.417±0.00 8.163±0.00 5.139±2.38 5.200±0.00 4.824±0.00 12.991±1.62 70.471±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000V2 CIL_0000V2_0002 CGP 22:50309030-50445090
CIL_00024L CIL_00024L_0001 CGP 22:50343304-50475025
CIL_0000IR CIL_0000IR_0001 CGP 22:50445000-50486440

Gene Ontology

GO IDEvidence TypeGO Description
GO:0016311 IEA dephosphorylation
GO:0016791 IEA phosphatase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000123791 Sbf1-001 protein_coding Mus_musculus 0 6715
ENSMUST00000124576 Sbf1-002 nonsense_mediated_decay Mus_musculus 0 6621
ENSMUST00000144585 Sbf1-003 protein_coding Mus_musculus 0 4418
ENSMUST00000175778 Sbf1-011 protein_coding Mus_musculus 0 1284
ENSDART00000109452 sbf1-001 protein_coding Danio_rerio 0 1131
ENSDART00000091599 sbf1-201 protein_coding Danio_rerio 0 1123
ENSMUST00000176028 Sbf1-012 retained_intron Mus_musculus 0 802
ENSMUST00000124398 Sbf1-009 retained_intron Mus_musculus 0 774
ENSMUST00000146637 Sbf1-004 protein_coding Mus_musculus 0 697
ENSMUST00000150539 Sbf1-008 retained_intron Mus_musculus 0 507
ENSMUST00000155146 Sbf1-007 retained_intron Mus_musculus 0 496
ENSMUST00000124642 Sbf1-005 nonsense_mediated_decay Mus_musculus 0 466
ENSMUST00000176277 Sbf1-014 retained_intron Mus_musculus 0 435

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