C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SET binding factor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000036529 Sbf1 10090 - 15:89288236-89315311 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000123791 Sbf1-001 89288236-89315311 protein_coding
  ENSMUST00000124398 Sbf1-009 89294001-89295651 retained_intron
  ENSMUST00000124576 Sbf1-002 89288286-89315271 nonsense_mediated_decay
  ENSMUST00000124642 Sbf1-005 89302283-89303334 nonsense_mediated_decay
  ENSMUST00000144585 Sbf1-003 89288283-89315255 protein_coding
  ENSMUST00000146637 Sbf1-004 89306011-89307800 protein_coding
  ENSMUST00000147020 Sbf1-006 89304888-89306617 retained_intron
  ENSMUST00000150539 Sbf1-008 89299717-89300460 retained_intron
  ENSMUST00000155146 Sbf1-007 89300555-89302630 retained_intron
  ENSMUST00000175778 Sbf1-011 89288287-89294297 protein_coding
  ENSMUST00000176028 Sbf1-012 89303093-89305095 retained_intron
  ENSMUST00000176277 Sbf1-014 89288557-89288959 retained_intron
  ENSMUST00000177388 Sbf1-013 89289736-89293810 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000123791ENSMUST00000124576ENSMUST00000144585ENSMUST00000146637ENSMUST00000175778
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000123791 4.529±0.82 8.069±1.52 2.895±0.20 24.694±17.79 10.285±3.63 20.639±1.62 N/A 6.401±1.04 3.757±0.87 7.192±0.94 N/A 14.359±3.93 4.194±0.66 4.270±0.21
ENSMUST00000124576 N/A N/A N/A 7.103±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 3.453±0.00 N/A
ENSMUST00000144585 16.230±1.71 18.988±3.80 9.617±0.24 10.497±2.06 16.023±7.35 14.114±2.19 11.205±1.65 9.202±2.03 5.582±0.99 16.728±4.28 10.819±0.54 16.922±4.54 9.389±4.24 20.503±6.64
ENSMUST00000146637 N/A N/A N/A N/A 55.580±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000175778 N/A 23.086±4.78 N/A N/A N/A N/A N/A 11.356±0.60 5.961±0.00 N/A N/A N/A 17.243±3.39 11.010±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00024L CIL_00024L_0002 CGP 15:89253035-89315311
CIL_0000IR CIL_0000IR_0002 CGP 15:89288236-89324728

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001558 TAS regulation of cell growth
GO:0001691 TAS pseudophosphatase activity
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0007283 IMP spermatogenesis
GO:0016311 IEA dephosphorylation
GO:0016791 IEA phosphatase activity
GO:0017112 IEA Rab guanyl-nucleotide exchange factor activity
GO:0032851 IEA positive regulation of Rab GTPase activity
GO:0043086 TAS negative regulation of catalytic activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062968 sbf1 SET binding factor 1 protein_coding Danio_rerio
ENSG00000100241 SBF1 SET binding factor 1 protein_coding Homo_sapiens

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