C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: choline kinase beta
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022617 Chkb 10090 - 15:89416405-89429908 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000023289 Chkb-001 89426367-89429899 protein_coding
  ENSMUST00000052315 Chkb-002 89416405-89429696 retained_intron
  ENSMUST00000112664 Chkb-010 89426360-89427161 processed_transcript
  ENSMUST00000115278 Chkb-006 89426468-89427159 retained_intron
  ENSMUST00000165623 Chkb-005 89427115-89429908 retained_intron
  ENSMUST00000166267 Chkb-007 89427380-89429430 retained_intron
  ENSMUST00000170334 Chkb-003 89426360-89429860 retained_intron
  ENSMUST00000170460 Chkb-009 89427635-89429093 protein_coding
  ENSMUST00000171140 Chkb-004 89426367-89429439 retained_intron
  ENSMUST00000171666 Chkb-008 89426441-89428493 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungOvaryPlacentaENSMUST00000023289ENSMUST00000165623ENSMUST00000170334ENSMUST00000171140ENSMUST00000171666
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta
ENSMUST00000023289 11.710±1.54 15.116±4.87 10.842±2.62 9.569±0.59 8.682±0.00 14.345±5.63 13.678±3.30 7.822±2.19 10.622±1.25 12.102±3.25 8.875±2.01
ENSMUST00000165623 N/A N/A 3.677±0.46 4.270±0.05 N/A N/A N/A N/A N/A 2.935±0.00 N/A
ENSMUST00000170334 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.863±0.00 N/A
ENSMUST00000171140 12.299±2.70 N/A 12.779±0.52 8.380±1.91 11.600±4.54 14.340±1.19 13.477±3.85 7.560±1.83 11.680±1.86 14.101±6.74 10.884±3.07
ENSMUST00000171666 N/A N/A N/A 4.800±0.00 N/A N/A N/A 14.445±0.00 N/A 21.033±7.52 15.535±5.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00028I CIL_00028I_0002 CGP 15:89390174-89425863
CIL_0002HR CIL_0002HR_0002 CGP 15:89416405-89429908

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004103 ISS choline kinase activity
GO:0004305 IEA ethanolamine kinase activity
GO:0005524 IEA ATP binding
GO:0006646 ISS phosphatidylethanolamine biosynthetic process
GO:0006656 IMP phosphatidylcholine biosynthetic process
GO:0006657 IEA CDP-choline pathway
GO:0007517 IMP muscle organ development
GO:0016310 IEA phosphorylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063167 chkb choline kinase beta protein_coding Danio_rerio
ENSG00000100288 CHKB choline kinase beta protein_coding Homo_sapiens
ENSG00000254413 CHKB-CPT1B CHKB-CPT1B readthrough (NMD candidate) protein_coding Homo_sapiens

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