C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding protein, fox-1 homolog (C. elegans) 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000397303 RBFOX2-009 ENSG00000100320 9606 - 22:35743958-35810004 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryPlacentaTestisENST00000397303
Transcript ID Ovary Placenta Testis
ENST00000397303 12.802±0.00 19.754±0.00 16.256±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099W CIL_00099W_0001 VISTA 22:35286634-35891311
CIL_00094Q CIL_00094Q_0001 VISTA 22:35329925-35944605
CIL_0008TT CIL_0008TT_0001 VISTA 22:35449644-36050666
CIL_0001VM CIL_0001VM_0001 CGP 22:35738736-36166177

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0043484 IEA regulation of RNA splicing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000166610 Rbfox2-203 protein_coding Mus_musculus 0 1886
ENSMUST00000171751 Rbfox2-204 protein_coding Mus_musculus 0 1886
ENSMUST00000111581 Rbfox2-202 protein_coding Mus_musculus 0 1840
ENSMUST00000048145 Rbfox2-201 protein_coding Mus_musculus 0 1254
ENSMUST00000115841 Rbfox1-202 protein_coding Mus_musculus 0 315
ENSMUST00000056416 Rbfox1-201 protein_coding Mus_musculus 0 315

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