C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding protein, fox-1 homolog (C. elegans) 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000416721 RBFOX2-008 ENSG00000100320 9606 - 22:35744148-35840284 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099W CIL_00099W_0001 VISTA 22:35286634-35891311
CIL_00094Q CIL_00094Q_0001 VISTA 22:35329925-35944605
CIL_0008TT CIL_0008TT_0001 VISTA 22:35449644-36050666
CIL_0001VM CIL_0001VM_0001 CGP 22:35738736-36166177

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000381 ISS regulation of alternative mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003714 IDA transcription corepressor activity
GO:0003723 IDA:IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006397 IEA mRNA processing
GO:0008134 IDA transcription factor binding
GO:0008380 IEA RNA splicing
GO:0016070 TAS RNA metabolic process
GO:0030520 IDA intracellular estrogen receptor signaling pathway
GO:0042127 TAS regulation of cell proliferation
GO:0043484 IEA regulation of RNA splicing
GO:0044822 IDA poly(A) RNA binding
GO:0045892 IDA negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000166610 Rbfox2-203 protein_coding Mus_musculus 0 1772
ENSMUST00000111581 Rbfox2-202 protein_coding Mus_musculus 0 1725
ENSMUST00000171751 Rbfox2-204 protein_coding Mus_musculus 0 1698
ENSMUST00000048145 Rbfox2-201 protein_coding Mus_musculus 0 1240
ENSMUST00000115841 Rbfox1-202 protein_coding Mus_musculus 0 311
ENSMUST00000056416 Rbfox1-201 protein_coding Mus_musculus 0 311

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