C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: eukaryotic translation initiation factor 3, subunit D
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100353 EIF3D 9606 - 22:36510850-36529436 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000216190 EIF3D-001 36510850-36529436 protein_coding
  ENST00000402116 EIF3D-007 36523916-36528942 protein_coding
  ENST00000405442 EIF3D-002 36510899-36528897 protein_coding
  ENST00000426531 EIF3D-009 36511577-36516931 retained_intron
  ENST00000432675 EIF3D-003 36523115-36529184 protein_coding
  ENST00000455547 EIF3D-005 36518813-36529166 protein_coding
  ENST00000457241 EIF3D-006 36520633-36529077 protein_coding
  ENST00000458572 EIF3D-010 36511701-36519501 nonsense_mediated_decay
  ENST00000462641 EIF3D-012 36510868-36512929 retained_intron
  ENST00000462794 EIF3D-008 36516063-36516923 retained_intron
  ENST00000478547 EIF3D-011 36510856-36511641 processed_transcript
  ENST00000496875 EIF3D-004 36524695-36529173 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000216190ENST00000405442ENST00000426531ENST00000432675ENST00000455547ENST00000457241ENST00000458572ENST00000462641
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000216190 17.809±0.00 22.481±0.00 5.777±0.00 6.091±1.72 15.085±3.55 24.026±7.05 4.320±0.10 13.531±1.01 12.464±0.00 19.177±0.00 12.896±9.54 51.499±20.00 45.341±6.04 21.257±4.75
ENST00000405442 44.581±0.00 53.985±0.00 N/A 15.745±0.00 33.831±0.00 50.071±0.00 24.355±0.00 23.471±0.00 16.460±0.00 48.357±0.00 26.551±23.92 43.852±4.66 40.213±8.30 51.974±0.00
ENST00000426531 N/A N/A N/A 11.053±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000432675 N/A N/A N/A N/A 6.403±0.00 N/A 3.713±0.00 N/A N/A 12.867±0.00 11.623±0.00 12.138±0.00 N/A N/A
ENST00000455547 N/A N/A N/A 7.124±0.00 N/A N/A N/A N/A 5.088±0.00 N/A N/A N/A N/A N/A
ENST00000457241 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 73.605±0.00 85.931±0.00 62.268±0.00
ENST00000458572 24.697±0.00 36.098±0.00 N/A 7.852±0.00 30.567±0.00 N/A N/A 15.257±0.00 11.114±0.00 N/A 20.052±0.00 N/A N/A N/A
ENST00000462641 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.004±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003GX CIL_0003GX_0001 CGP 22:36487190-36529436
CIL_0005SO CIL_0005SO_0001 CGP 22:36510850-36703558

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001731 IEA formation of translation preinitiation complex
GO:0001732 IEA formation of cytoplasmic translation initiation complex
GO:0003743 IC:IEA translation initiation factor activity
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005829 TAS cytosol
GO:0005852 IDA:IEA eukaryotic translation initiation factor 3 complex
GO:0006412 TAS translation
GO:0006413 IC translational initiation
GO:0006446 IEA regulation of translational initiation
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016282 IEA eukaryotic 43S preinitiation complex
GO:0033290 IEA eukaryotic 48S preinitiation complex
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0071541 IEA eukaryotic translation initiation factor 3 complex, eIF3m

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000021257 eif3d eukaryotic translation initiation factor 3, subunit D protein_coding Danio_rerio
ENSMUSG00000016554 Eif3d eukaryotic translation initiation factor 3, subunit D protein_coding Mus_musculus

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