C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic translation initiation factor 3, subunit D
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000405442 EIF3D-002 ENSG00000100353 9606 - 22:36510899-36528897 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000405442
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000405442 44.581±0.00 53.985±0.00 15.745±0.00 33.831±0.00 50.071±0.00 24.355±0.00 23.471±0.00 16.460±0.00 48.357±0.00 26.551±23.92 43.852±4.66 40.213±8.30 51.974±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003GX CIL_0003GX_0001 CGP 22:36487190-36529436
CIL_0005SO CIL_0005SO_0001 CGP 22:36510850-36703558

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001731 IEA formation of translation preinitiation complex
GO:0003743 IC:IEA translation initiation factor activity
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005829 TAS cytosol
GO:0005852 IDA:IEA eukaryotic translation initiation factor 3 complex
GO:0006412 TAS translation
GO:0006413 IC translational initiation
GO:0006446 IEA regulation of translational initiation
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016282 IEA eukaryotic 43S preinitiation complex
GO:0033290 IEA eukaryotic 48S preinitiation complex
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000100484 Eif3d-201 protein_coding Mus_musculus 0 2246
ENSDART00000132298 eif3d-001 protein_coding Danio_rerio 0 1317
ENSDART00000011052 eif3d-201 protein_coding Danio_rerio 0 1295
ENSMUST00000016698 Gm17031-001 processed_pseudogene Mus_musculus 0 817
ENSDART00000151568 eif3d-004 nonsense_mediated_decay Danio_rerio 0 508
ENSDART00000150898 eif3d-005 nonsense_mediated_decay Danio_rerio 0 219

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