C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003GX_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000100350-ENSG00000100353 CGP 9606 22:36487190-36529436
GeneTranscriptPositionBiotype
ENSG00000100350 (FOXRED2)
FAD-dependent oxidoreductase domain containing 2 		ENST00000216187 (FOXRED2-002) 36488242-36507022 protein_coding
ENST00000366463 (FOXRED2-004) 36488599-36498397 protein_coding
ENST00000397223 (FOXRED2-003) 36489987-36506530 protein_coding
ENST00000397224 (FOXRED2-001) 36487190-36507101 protein_coding
ENST00000423980 (FOXRED2-005) 36506164-36507043 protein_coding
ENSG00000100353 (EIF3D)
eukaryotic translation initiation factor 3, subunit D 		ENST00000216190 (EIF3D-001) 36510850-36529436 protein_coding
ENST00000402116 (EIF3D-007) 36523916-36528942 protein_coding
ENST00000405442 (EIF3D-002) 36510899-36528897 protein_coding
ENST00000426531 (EIF3D-009) 36511577-36516931 retained_intron
ENST00000432675 (EIF3D-003) 36523115-36529184 protein_coding
ENST00000455547 (EIF3D-005) 36518813-36529166 protein_coding
ENST00000457241 (EIF3D-006) 36520633-36529077 protein_coding
ENST00000458572 (EIF3D-010) 36511701-36519501 nonsense_mediated_decay
ENST00000462641 (EIF3D-012) 36510868-36512929 retained_intron
ENST00000462794 (EIF3D-008) 36516063-36516923 retained_intron
ENST00000478547 (EIF3D-011) 36510856-36511641 processed_transcript
ENST00000496875 (EIF3D-004) 36524695-36529173 retained_intron

Homo sapiens Ensembl (GRCh38)

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CIL_0003GX_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000016552-ENSMUSG00000016554 CGP 10090 15:77940522-77970824
GeneTranscriptPositionBiotype
ENSMUSG00000016552 (Foxred2)
FAD-dependent oxidoreductase domain containing 2 		ENSMUST00000016696 (Foxred2-001) 77940522-77956722 protein_coding
ENSMUST00000117725 (Foxred2-002) 77941019-77956675 protein_coding
ENSMUST00000129045 (Foxred2-003) 77952753-77956683 retained_intron
ENSMUST00000140096 (Foxred2-004) 77940526-77945888 retained_intron
ENSMUSG00000016554 (Eif3d)
eukaryotic translation initiation factor 3, subunit D 		ENSMUST00000100484 (Eif3d-201) 77958998-77970824 protein_coding
ENSMUSG00000097057 (Gm17638)
predicted gene, 17638 		ENSMUST00000181255 (Gm17638-201) 77961674-77967126 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003GX_0001ENSG00000100350ENST00000216187ENST00000366463ENST00000397223ENST00000397224ENST00000423980ENSG00000100353ENST00000216190ENST00000402116ENST00000405442ENST00000426531ENST00000432675ENST00000455547ENST00000457241ENST00000458572ENST00000462641ENST00000462794ENST00000478547ENST00000496875CIL_0003GX_0002ENSMUSG00000016552ENSMUST00000016696ENSMUST00000117725ENSMUST00000129045ENSMUST00000140096ENSMUSG00000016554ENSMUST00000100484ENSMUSG00000097057ENSMUST00000181255
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003GX_0001ENSG00000100350ENST00000216187ENST00000366463ENST00000397223ENST00000397224ENSG00000100353ENST00000216190ENST00000405442ENST00000426531ENST00000432675ENST00000455547ENST00000457241ENST00000458572ENST00000462641CIL_0003GX_0002ENSMUSG00000016552ENSMUST00000016696ENSMUST00000117725ENSMUST00000129045ENSMUST00000140096ENSMUSG00000016554ENSMUST00000100484ENSMUSG00000097057ENSMUST00000181255
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000100350 ENST00000216187 N/A N/A 0.217±0.00 N/A 0.206±0.00 N/A N/A N/A N/A N/A 1.057±0.00 N/A N/A N/A
ENST00000366463 N/A N/A N/A N/A N/A 0.049±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000397223 N/A N/A 0.601±0.00 2.145±0.00 0.306±0.00 0.113±0.00 1.221±0.00 0.507±0.00 N/A N/A 1.704±1.59 0.317±0.00 N/A N/A
ENST00000397224 0.926±0.00 3.371±0.00 N/A 6.198±0.00 1.018±0.64 N/A 0.467±0.00 0.916±0.73 0.640±0.55 0.744±0.23 1.031±0.92 5.039±0.79 1.159±0.09 3.917±3.08
ENST00000423980 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000100353 ENST00000216190 17.809±0.00 22.481±0.00 5.777±0.00 6.091±1.72 15.085±3.55 24.026±7.05 4.320±0.10 13.531±1.01 12.464±0.00 19.177±0.00 12.896±9.54 51.499±20.00 45.341±6.04 21.257±4.75
ENST00000402116 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000405442 44.581±0.00 53.985±0.00 N/A 15.745±0.00 33.831±0.00 50.071±0.00 24.355±0.00 23.471±0.00 16.460±0.00 48.357±0.00 26.551±23.92 43.852±4.66 40.213±8.30 51.974±0.00
ENST00000426531 N/A N/A N/A 11.053±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000432675 N/A N/A N/A N/A 6.403±0.00 N/A 3.713±0.00 N/A N/A 12.867±0.00 11.623±0.00 12.138±0.00 N/A N/A
ENST00000455547 N/A N/A N/A 7.124±0.00 N/A N/A N/A N/A 5.088±0.00 N/A N/A N/A N/A N/A
ENST00000457241 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 73.605±0.00 85.931±0.00 62.268±0.00
ENST00000458572 24.697±0.00 36.098±0.00 N/A 7.852±0.00 30.567±0.00 N/A N/A 15.257±0.00 11.114±0.00 N/A 20.052±0.00 N/A N/A N/A
ENST00000462641 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.004±0.00 N/A N/A N/A
ENST00000462794 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478547 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496875 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000016552 ENSMUST00000016696 1.378±0.41 1.648±0.60 0.793±0.21 2.837±0.95 2.173±1.26 1.267±0.31 0.159±0.07 0.723±0.21 0.437±0.22 0.522±0.14 0.177±0.09 2.257±0.81 0.386±0.40 0.562±0.51
ENSMUST00000117725 0.955±0.09 0.527±0.24 0.318±0.00 1.598±0.49 1.599±0.73 0.670±0.33 0.106±0.07 0.345±0.12 0.108±0.12 0.169±0.05 N/A 0.568±0.13 0.096±0.01 N/A
ENSMUST00000129045 N/A N/A N/A 1.110±0.00 N/A N/A N/A N/A 0.023±0.00 N/A N/A N/A 0.032±0.00 N/A
ENSMUST00000140096 0.822±0.31 0.405±0.00 0.552±0.00 1.380±0.14 1.207±0.00 0.502±0.00 0.171±0.04 0.680±0.13 0.148±0.16 0.325±0.14 0.087±0.04 1.331±0.76 0.150±0.08 0.309±0.00
ENSMUSG00000016554 ENSMUST00000100484 39.019±7.56 17.970±2.73 35.871±11.11 51.317±8.71 26.992±4.02 27.506±2.52 15.880±0.40 22.657±2.02 54.184±38.03 22.018±3.94 19.991±0.97 58.280±17.33 60.395±34.35 36.678±9.44
ENSMUSG00000097057 ENSMUST00000181255 N/A N/A N/A N/A 1.576±0.00 2.471±0.00 N/A 2.185±0.00 N/A N/A N/A 5.757±0.00 N/A N/A

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