C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Ras and Rab interactor 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100599 RIN3 9606 + 14:92513774-92688994 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000216487 RIN3-001 92513774-92688994 protein_coding
  ENST00000418924 RIN3-005 92576234-92688987 processed_transcript
  ENST00000553959 RIN3-014 92659385-92688049 processed_transcript
  ENST00000553992 RIN3-012 92650918-92652115 processed_transcript
  ENST00000554888 RIN3-011 92615473-92645190 processed_transcript
  ENST00000555589 RIN3-003 92513793-92688041 nonsense_mediated_decay
  ENST00000555891 RIN3-010 92577295-92586580 retained_intron
  ENST00000555908 RIN3-013 92576244-92586580 processed_transcript
  ENST00000556385 RIN3-009 92555840-92616028 retained_intron
  ENST00000556418 RIN3-007 92652501-92688049 protein_coding
  ENST00000557762 RIN3-008 92513804-92515507 protein_coding
  ENST00000620541 RIN3-201 92513793-92688987 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000216487ENST00000418924ENST00000553959ENST00000554888ENST00000555589ENST00000556385ENST00000556418ENST00000557762ENST00000620541
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000216487 7.213±0.00 5.595±0.00 N/A 0.866±0.00 1.471±0.00 7.015±0.00 1.362±0.00 N/A 2.457±0.00 5.981±0.00 8.044±0.00 2.703±0.46 4.488±0.00
ENST00000418924 N/A N/A N/A 0.042±0.00 N/A N/A N/A N/A N/A 0.731±0.00 3.843±0.00 N/A 1.245±0.00
ENST00000553959 N/A N/A 0.367±0.00 N/A N/A N/A N/A 1.330±0.00 N/A N/A 1.181±0.00 N/A N/A
ENST00000554888 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.421±0.00 N/A N/A
ENST00000555589 N/A N/A N/A 0.828±0.00 N/A N/A 0.165±0.00 0.843±0.00 N/A 0.702±0.00 2.715±0.00 N/A N/A
ENST00000556385 N/A N/A N/A 0.096±0.00 N/A N/A 0.284±0.00 N/A N/A N/A N/A N/A N/A
ENST00000556418 N/A N/A N/A 0.036±0.00 N/A N/A 0.061±0.00 N/A 0.197±0.00 N/A N/A N/A N/A
ENST00000557762 N/A N/A N/A N/A N/A 1.568±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000620541 9.840±0.00 2.322±0.00 N/A 2.256±0.00 2.061±0.00 N/A 4.966±0.00 5.369±0.00 3.896±3.43 5.323±0.00 3.935±0.91 5.053±1.40 3.467±0.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000539 CIL_000539_0001 CGP 14:92322581-92688994
CIL_000536 CIL_000536_0001 CGP 14:92513774-92748702

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005096 IEA GTPase activator activity
GO:0005515 IPI protein binding
GO:0005769 IDA early endosome
GO:0006897 NAS endocytosis
GO:0007165 IEA signal transduction
GO:0017112 IMP Rab guanyl-nucleotide exchange factor activity
GO:0017137 IDA Rab GTPase binding
GO:0031410 IDA cytoplasmic vesicle
GO:0032851 IMP positive regulation of Rab GTPase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077618 RIN3 Ras and Rab interactor 3 protein_coding Danio_rerio
ENSMUSG00000044456 Rin3 Ras and Rab interactor 3 protein_coding Mus_musculus

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