C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Ras and Rab interactor 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000216487 RIN3-001 ENSG00000100599 9606 + 14:92513774-92688994 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverLungOvaryPlacentaTestisENST00000216487
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Lung Ovary Placenta Testis
ENST00000216487 7.213±0.00 5.595±0.00 0.866±0.00 1.471±0.00 7.015±0.00 1.362±0.00 2.457±0.00 5.981±0.00 8.044±0.00 2.703±0.46 4.488±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000539 CIL_000539_0001 CGP 14:92322581-92688994
CIL_000536 CIL_000536_0001 CGP 14:92513774-92748702

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005096 IEA GTPase activator activity
GO:0005515 IPI protein binding
GO:0005769 IDA early endosome
GO:0006897 NAS endocytosis
GO:0007165 IEA signal transduction
GO:0017112 IMP Rab guanyl-nucleotide exchange factor activity
GO:0017137 IDA Rab GTPase binding
GO:0031410 IDA cytoplasmic vesicle
GO:0032851 IMP positive regulation of Rab GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000056950 Rin3-001 protein_coding Mus_musculus 0 2202
ENSMUST00000133820 Rin3-004 protein_coding Mus_musculus 0 2193
ENSMUST00000101114 Rin3-002 protein_coding Mus_musculus 0 466
ENSMUST00000131076 Rin3-005 processed_transcript Mus_musculus 0 241

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