C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000539_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000140090-ENSG00000100599 CGP 9606 14:92322581-92688994
GeneTranscriptPositionBiotype
ENSG00000100599 (RIN3)
Ras and Rab interactor 3 		ENST00000216487 (RIN3-001) 92513774-92688994 protein_coding
ENST00000418924 (RIN3-005) 92576234-92688987 processed_transcript
ENST00000553959 (RIN3-014) 92659385-92688049 processed_transcript
ENST00000553992 (RIN3-012) 92650918-92652115 processed_transcript
ENST00000554888 (RIN3-011) 92615473-92645190 processed_transcript
ENST00000555589 (RIN3-003) 92513793-92688041 nonsense_mediated_decay
ENST00000555891 (RIN3-010) 92577295-92586580 retained_intron
ENST00000555908 (RIN3-013) 92576244-92586580 processed_transcript
ENST00000556385 (RIN3-009) 92555840-92616028 retained_intron
ENST00000556418 (RIN3-007) 92652501-92688049 protein_coding
ENST00000557762 (RIN3-008) 92513804-92515507 protein_coding
ENST00000620541 (RIN3-201) 92513793-92688987 protein_coding
ENSG00000140090 (SLC24A4)
solute carrier family 24 (sodium/potassium/calcium exchanger), member 4 		ENST00000393265 (SLC24A4-003) 92322581-92496251 protein_coding
ENST00000525557 (SLC24A4-007) 92439364-92496252 protein_coding
ENST00000526482 (SLC24A4-005) 92452766-92496252 retained_intron
ENST00000531433 (SLC24A4-002) 92323193-92496251 protein_coding
ENST00000532405 (SLC24A4-001) 92323605-92501483 protein_coding
ENST00000554461 (SLC24A4-009) 92408379-92442753 protein_coding
ENST00000554925 (SLC24A4-008) 92443365-92493922 retained_intron
ENST00000556739 (SLC24A4-004) 92450218-92462747 processed_transcript
CIL_000539_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000041771-ENSMUSG00000044456 CGP 10090 12:102128733-102390855
GeneTranscriptPositionBiotype
ENSMUSG00000041771 (Slc24a4)
solute carrier family 24 (sodium/potassium/calcium exchanger), member 4 		ENSMUST00000079020 (Slc24a4-001) 102129174-102266749 protein_coding
ENSMUST00000159329 (Slc24a4-002) 102128733-102267091 protein_coding
ENSMUST00000161325 (Slc24a4-003) 102129391-102266641 protein_coding
ENSMUSG00000044456 (Rin3)
Ras and Rab interactor 3 		ENSMUST00000056950 (Rin3-001) 102283048-102390855 protein_coding
ENSMUST00000101114 (Rin3-002) 102283167-102363068 protein_coding
ENSMUST00000131076 (Rin3-005) 102354745-102368573 processed_transcript
ENSMUST00000133820 (Rin3-004) 102283641-102390855 protein_coding
ENSMUST00000137249 (Rin3-006) 102354745-102361507 processed_transcript
ENSMUST00000139686 (Rin3-007) 102354780-102359232 retained_intron
ENSMUST00000150795 (Rin3-003) 102283168-102326785 protein_coding
ENSMUSG00000064776 (Gm25203)
predicted gene, 25203 		ENSMUST00000082842 (Gm25203-201) 102253473-102253687 snoRNA
ENSMUSG00000090050 (Gm16339)
predicted gene 16339 		ENSMUST00000160954 (Gm16339-001) 102127806-102129906 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000539_0001ENSG00000100599ENST00000216487ENST00000418924ENST00000553959ENST00000553992ENST00000554888ENST00000555589ENST00000555891ENST00000555908ENST00000556385ENST00000556418ENST00000557762ENST00000620541ENSG00000140090ENST00000393265ENST00000525557ENST00000526482ENST00000531433ENST00000532405ENST00000554461ENST00000554925ENST00000556739CIL_000539_0002ENSMUSG00000041771ENSMUST00000079020ENSMUST00000159329ENSMUST00000161325ENSMUSG00000044456ENSMUST00000056950ENSMUST00000101114ENSMUST00000131076ENSMUST00000133820ENSMUST00000137249ENSMUST00000139686ENSMUST00000150795ENSMUSG00000064776ENSMUST00000082842ENSMUSG00000090050ENSMUST00000160954
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000539_0001ENSG00000100599ENST00000216487ENST00000418924ENST00000553959ENST00000554888ENST00000555589ENST00000556385ENST00000556418ENST00000557762ENST00000620541ENSG00000140090ENST00000393265ENST00000525557ENST00000526482ENST00000531433ENST00000532405ENST00000554925ENST00000556739CIL_000539_0002ENSMUSG00000041771ENSMUST00000079020ENSMUST00000159329ENSMUST00000161325ENSMUSG00000044456ENSMUST00000056950ENSMUST00000133820ENSMUSG00000064776ENSMUST00000082842ENSMUSG00000090050ENSMUST00000160954
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000100599 ENST00000216487 7.213±0.00 5.595±0.00 N/A 0.866±0.00 1.471±0.00 7.015±0.00 1.362±0.00 N/A 2.457±0.00 5.981±0.00 N/A 8.044±0.00 2.703±0.46 4.488±0.00
ENST00000418924 N/A N/A N/A 0.042±0.00 N/A N/A N/A N/A N/A 0.731±0.00 N/A 3.843±0.00 N/A 1.245±0.00
ENST00000553959 N/A N/A 0.367±0.00 N/A N/A N/A N/A 1.330±0.00 N/A N/A N/A 1.181±0.00 N/A N/A
ENST00000553992 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554888 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.421±0.00 N/A N/A
ENST00000555589 N/A N/A N/A 0.828±0.00 N/A N/A 0.165±0.00 0.843±0.00 N/A 0.702±0.00 N/A 2.715±0.00 N/A N/A
ENST00000555891 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555908 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556385 N/A N/A N/A 0.096±0.00 N/A N/A 0.284±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000556418 N/A N/A N/A 0.036±0.00 N/A N/A 0.061±0.00 N/A 0.197±0.00 N/A N/A N/A N/A N/A
ENST00000557762 N/A N/A N/A N/A N/A 1.568±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000620541 9.840±0.00 2.322±0.00 N/A 2.256±0.00 2.061±0.00 N/A 4.966±0.00 5.369±0.00 3.896±3.43 5.323±0.00 N/A 3.935±0.91 5.053±1.40 3.467±0.36
ENSG00000140090 ENST00000393265 N/A N/A N/A N/A N/A 0.118±0.00 N/A N/A N/A 0.105±0.00 N/A N/A N/A N/A
ENST00000525557 N/A N/A N/A N/A 0.041±0.00 N/A 0.010±0.00 N/A N/A N/A N/A 0.022±0.00 0.132±0.09 N/A
ENST00000526482 N/A N/A N/A N/A 0.103±0.00 N/A N/A N/A 0.120±0.00 0.162±0.06 N/A 0.032±0.00 N/A N/A
ENST00000531433 N/A N/A N/A 0.699±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532405 0.126±0.00 0.207±0.00 N/A 1.434±0.00 0.081±0.06 0.053±0.00 N/A 0.042±0.02 N/A N/A 0.001±0.00 0.042±0.00 0.033±0.01 N/A
ENST00000554461 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554925 N/A N/A N/A N/A N/A N/A 0.029±0.00 0.084±0.00 N/A N/A 0.064±0.00 N/A 0.143±0.00 N/A
ENST00000556739 N/A 0.173±0.00 N/A N/A 0.093±0.00 N/A N/A N/A 0.066±0.00 0.200±0.00 0.021±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000041771 ENSMUST00000079020 0.116±0.11 0.056±0.00 0.024±0.00 0.129±0.00 N/A 0.087±0.00 0.233±0.14 0.056±0.01 0.063±0.02 5.366±2.34 N/A 0.526±0.13 0.060±0.01 0.016±0.00
ENSMUST00000159329 0.071±0.06 0.158±0.10 0.005±0.00 0.114±0.00 0.038±0.02 0.025±0.02 0.079±0.03 0.031±0.01 N/A 2.173±0.04 0.011±0.00 0.599±0.43 0.028±0.01 0.070±0.03
ENSMUST00000161325 0.077±0.00 0.169±0.05 0.005±0.00 0.227±0.00 0.053±0.03 0.035±0.00 0.312±0.15 0.028±0.00 0.054±0.03 N/A N/A 0.304±0.00 0.064±0.07 0.124±0.04
ENSMUSG00000044456 ENSMUST00000056950 5.606±0.78 2.556±0.31 1.622±0.67 0.826±0.53 6.530±2.09 3.203±0.74 2.342±0.67 4.629±0.62 3.128±0.96 14.286±1.13 1.093±0.37 2.716±0.60 4.629±3.68 0.640±0.31
ENSMUST00000101114 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131076 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133820 N/A N/A N/A 0.079±0.00 3.405±0.00 N/A N/A N/A 0.406±0.00 N/A 0.875±0.46 2.328±1.15 10.918±7.58 N/A
ENSMUST00000137249 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139686 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150795 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000064776 ENSMUST00000082842 N/A N/A N/A 0.287±0.00 N/A N/A N/A N/A N/A N/A N/A 0.829±0.00 N/A N/A
ENSMUSG00000090050 ENSMUST00000160954 N/A N/A N/A 0.104±0.03 N/A N/A 0.030±0.00 N/A N/A 0.182±0.09 N/A 0.083±0.00 N/A N/A

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