C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Ras and Rab interactor 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000044456 Rin3 10090 + 12:102283048-102390855 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000056950 Rin3-001 102283048-102390855 protein_coding
  ENSMUST00000101114 Rin3-002 102283167-102363068 protein_coding
  ENSMUST00000131076 Rin3-005 102354745-102368573 processed_transcript
  ENSMUST00000133820 Rin3-004 102283641-102390855 protein_coding
  ENSMUST00000137249 Rin3-006 102354745-102361507 processed_transcript
  ENSMUST00000139686 Rin3-007 102354780-102359232 retained_intron
  ENSMUST00000150795 Rin3-003 102283168-102326785 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000056950ENSMUST00000133820
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000056950 5.606±0.78 2.556±0.31 1.622±0.67 0.826±0.53 6.530±2.09 3.203±0.74 2.342±0.67 4.629±0.62 3.128±0.96 14.286±1.13 1.093±0.37 2.716±0.60 4.629±3.68 0.640±0.31
ENSMUST00000133820 N/A N/A N/A 0.079±0.00 3.405±0.00 N/A N/A N/A 0.406±0.00 N/A 0.875±0.46 2.328±1.15 10.918±7.58 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000539 CIL_000539_0002 CGP 12:102128733-102390855
CIL_000536 CIL_000536_0002 CGP 12:102283048-102439813

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005096 IEA GTPase activator activity
GO:0005515 IEA protein binding
GO:0005769 ISS early endosome
GO:0007165 IEA signal transduction
GO:0017112 ISS Rab guanyl-nucleotide exchange factor activity
GO:0017137 ISS Rab GTPase binding
GO:0031410 ISS cytoplasmic vesicle
GO:0032851 ISS positive regulation of Rab GTPase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077618 RIN3 Ras and Rab interactor 3 protein_coding Danio_rerio
ENSG00000100599 RIN3 Ras and Rab interactor 3 protein_coding Homo_sapiens

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