C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SNW domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100603 SNW1 9606 - 14:77717599-77761207 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000261531 SNW1-001 77717599-77761190 protein_coding
  ENST00000553565 SNW1-008 77730856-77737007 retained_intron
  ENST00000554324 SNW1-007 77732539-77761156 protein_coding
  ENST00000554775 SNW1-004 77717628-77761155 protein_coding
  ENST00000555761 SNW1-003 77717953-77761156 protein_coding
  ENST00000556428 SNW1-002 77717791-77761207 nonsense_mediated_decay
  ENST00000557663 SNW1-006 77738738-77761156 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000261531ENST00000553565ENST00000554775ENST00000556428
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000261531 14.970±0.00 9.007±0.00 1.301±0.00 5.311±2.15 4.378±1.42 7.068±0.00 5.635±2.46 3.973±0.00 5.237±0.51 9.023±7.28 9.210±5.96 11.574±4.50 15.216±2.83 25.029±0.00
ENST00000553565 N/A N/A N/A N/A N/A N/A N/A 7.209±0.00 N/A N/A N/A N/A N/A N/A
ENST00000554775 21.195±0.00 19.022±0.00 4.432±0.00 9.507±3.79 9.688±5.22 9.677±3.34 N/A 6.260±3.97 3.951±0.75 6.930±2.57 4.859±2.74 17.005±4.54 12.629±5.24 42.167±2.76
ENST00000556428 N/A N/A N/A 5.960±0.00 3.234±0.85 6.146±0.00 3.841±0.00 8.071±0.00 N/A 5.027±1.29 N/A N/A 11.115±0.00 22.002±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004TV CIL_0004TV_0001 CGP 14:77672404-77761104
CIL_0004U2 CIL_0004U2_0001 CGP 14:77708071-77761207

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000398 IEA:IC mRNA splicing, via spliceosome
GO:0000785 IEA chromatin
GO:0003713 IDA transcription coactivator activity
GO:0003714 IDA transcription corepressor activity
GO:0005112 IPI Notch binding
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 IEA:IDA spliceosomal complex
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0006614 IEA SRP-dependent cotranslational protein targeting to membrane
GO:0007219 TAS Notch signaling pathway
GO:0008024 IDA positive transcription elongation factor complex b
GO:0010467 TAS gene expression
GO:0016032 IEA viral process
GO:0016363 IDA nuclear matrix
GO:0030511 IDA positive regulation of transforming growth factor beta receptor signaling pathway
GO:0035257 IDA nuclear hormone receptor binding
GO:0042771 IMP intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
GO:0042809 IDA vitamin D receptor binding
GO:0042974 IDA retinoic acid receptor binding
GO:0043923 IDA positive regulation by host of viral transcription
GO:0044822 IDA poly(A) RNA binding
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046332 IDA SMAD binding
GO:0048026 IMP positive regulation of mRNA splicing, via spliceosome
GO:0048384 IDA retinoic acid receptor signaling pathway
GO:0048385 IDA regulation of retinoic acid receptor signaling pathway
GO:0050769 ISS positive regulation of neurogenesis
GO:0051571 IMP positive regulation of histone H3-K4 methylation
GO:0070562 IDA regulation of vitamin D receptor signaling pathway
GO:0070564 IDA positive regulation of vitamin D receptor signaling pathway
GO:0071013 IDA catalytic step 2 spliceosome
GO:0071146 IDA SMAD3-SMAD4 protein complex
GO:0071300 IDA cellular response to retinoic acid

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000091563 snw1 SNW domain containing 1 protein_coding Danio_rerio
ENSMUSG00000021039 Snw1 SNW domain containing 1 protein_coding Mus_musculus

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