C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SNW domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000261531 SNW1-001 ENSG00000100603 9606 - 14:77717599-77761190 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000261531
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000261531 14.970±0.00 9.007±0.00 1.301±0.00 5.311±2.15 4.378±1.42 7.068±0.00 5.635±2.46 3.973±0.00 5.237±0.51 9.023±7.28 9.210±5.96 11.574±4.50 15.216±2.83 25.029±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004TV CIL_0004TV_0001 CGP 14:77672404-77761104
CIL_0004U2 CIL_0004U2_0001 CGP 14:77708071-77761207

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000398 IEA:IC mRNA splicing, via spliceosome
GO:0000785 IEA chromatin
GO:0003713 IDA transcription coactivator activity
GO:0003714 IDA transcription corepressor activity
GO:0005112 IPI Notch binding
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 IEA:IDA spliceosomal complex
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0006614 IEA SRP-dependent cotranslational protein targeting to membrane
GO:0007219 TAS Notch signaling pathway
GO:0008024 IDA positive transcription elongation factor complex b
GO:0010467 TAS gene expression
GO:0016032 IEA viral process
GO:0016363 IDA nuclear matrix
GO:0030511 IDA positive regulation of transforming growth factor beta receptor signaling pathway
GO:0035257 IDA nuclear hormone receptor binding
GO:0042771 IMP intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
GO:0042809 IDA vitamin D receptor binding
GO:0042974 IDA retinoic acid receptor binding
GO:0043923 IDA positive regulation by host of viral transcription
GO:0044822 IDA poly(A) RNA binding
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046332 IDA SMAD binding
GO:0048026 IMP positive regulation of mRNA splicing, via spliceosome
GO:0048384 IDA retinoic acid receptor signaling pathway
GO:0048385 IDA regulation of retinoic acid receptor signaling pathway
GO:0050769 ISS positive regulation of neurogenesis
GO:0051571 IMP positive regulation of histone H3-K4 methylation
GO:0070562 IDA regulation of vitamin D receptor signaling pathway
GO:0070564 IDA positive regulation of vitamin D receptor signaling pathway
GO:0071013 IDA catalytic step 2 spliceosome
GO:0071146 IDA SMAD3-SMAD4 protein complex
GO:0071300 IDA cellular response to retinoic acid

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021428 Snw1-201 protein_coding Mus_musculus 0 2318
ENSMUST00000177721 Gm4810-201 processed_pseudogene Mus_musculus 0 1474
ENSMUST00000135069 Gm4954-001 processed_pseudogene Mus_musculus 0 1419
ENSMUST00000036570 Appl1-001 protein_coding Mus_musculus 0 542
ENSMUST00000161023 Slirp-001 protein_coding Mus_musculus 0 294

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