C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SNW domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000556428 SNW1-002 ENSG00000100603 9606 - 14:77717791-77761207 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLungPlacentaTestisENST00000556428
Transcript ID Brain Breast Colon Heart Kidney Lung Placenta Testis
ENST00000556428 5.960±0.00 3.234±0.85 6.146±0.00 3.841±0.00 8.071±0.00 5.027±1.29 11.115±0.00 22.002±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004TV CIL_0004TV_0001 CGP 14:77672404-77761104
CIL_0004U2 CIL_0004U2_0001 CGP 14:77708071-77761207

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021428 Snw1-201 protein_coding Mus_musculus 0 2228
ENSMUST00000177721 Gm4810-201 processed_pseudogene Mus_musculus 0 1474
ENSMUST00000135069 Gm4954-001 processed_pseudogene Mus_musculus 0 1375
ENSMUST00000036570 Appl1-001 protein_coding Mus_musculus 0 542
ENSMUST00000161023 Slirp-001 protein_coding Mus_musculus 0 294

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