C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SNW domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000554775 SNW1-004 ENSG00000100603 9606 - 14:77717628-77761155 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000554775
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000554775 21.195±0.00 19.022±0.00 4.432±0.00 9.507±3.79 9.688±5.22 9.677±3.34 6.260±3.97 3.951±0.75 6.930±2.57 4.859±2.74 17.005±4.54 12.629±5.24 42.167±2.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004TV CIL_0004TV_0001 CGP 14:77672404-77761104
CIL_0004U2 CIL_0004U2_0001 CGP 14:77708071-77761207

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 IEA mRNA splicing, via spliceosome
GO:0005525 IEA GTP binding
GO:0005634 IDA nucleus
GO:0005681 IEA spliceosomal complex
GO:0006614 IEA SRP-dependent cotranslational protein targeting to membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021428 Snw1-201 protein_coding Mus_musculus 0 1700
ENSMUST00000177721 Gm4810-201 processed_pseudogene Mus_musculus 0 1264
ENSMUST00000135069 Gm4954-001 processed_pseudogene Mus_musculus 0 1048
ENSMUST00000036570 Appl1-001 protein_coding Mus_musculus 0 542
ENSMUST00000161023 Slirp-001 protein_coding Mus_musculus 0 294

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