C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: poly(A) binding protein, cytoplasmic 1-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000217074 PABPC1L-017 ENSG00000101104 9606 + 20:44910062-44930726 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000217074
Transcript ID Adipose Adrenal Bladder Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000217074 0.342±0.00 2.175±0.00 1.386±0.00 0.853±0.00 0.171±0.00 0.498±0.00 1.866±0.00 1.046±0.39 8.768±9.23 0.557±0.20 3.463±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003UV CIL_0003UV_0001 CGP 20:44885676-44959035
CIL_0002ZU CIL_0002ZU_0001 CGP 20:44910062-44960486

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000067715 Pabpc1l-001 protein_coding Mus_musculus 0 952
ENSMUST00000141671 Pabpc1l-002 processed_transcript Mus_musculus 0 588
ENSMUST00000156087 Pabpc1l-003 processed_transcript Mus_musculus 4e-38 163

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