C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | crooked neck pre-mRNA splicing factor 1 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000490910  |
CRNKL1-003 |
ENSG00000101343 |
9606 | - |
20:20034368-20056046  |
nonsense_mediated_decay |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0007Z5 | CIL_0007Z5_0001 | VISTA | 20:19702996-20303586 |
| CIL_0002MS | CIL_0002MS_0001 | CGP | 20:20017116-20056046 |
| CIL_0001TY | CIL_0001TY_0001 | CGP | 20:20034368-20360702 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0000245 | IDA | spliceosomal complex assembly |
| GO:0000398 | IC | mRNA splicing, via spliceosome |
| GO:0003723 | IDA | RNA binding |
| GO:0005515 | IPI | protein binding |
| GO:0005681 | IDA | spliceosomal complex |
| GO:0005737 | IEA | cytoplasm |
| GO:0044822 | IDA | poly(A) RNA binding |
| GO:0071013 | IDA | catalytic step 2 spliceosome |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000001818
|
Crnkl1-001 | protein_coding | Mus_musculus | 0 | 2553 |
|
ENSMUST00000096093
|
Gm5989-201 | processed_pseudogene | Mus_musculus | 0 | 2015 |
|
ENSMUST00000096092
|
Gm5301-201 | processed_pseudogene | Mus_musculus | 0 | 1982 |
|
ENSMUST00000164674
|
Gm4782-201 | protein_coding | Mus_musculus | 0 | 1982 |
|
ENSMUST00000168705
|
Gm8038-201 | processed_pseudogene | Mus_musculus | 0 | 1977 |
|
ENSDART00000112689
|
crnkl1-201 | protein_coding | Danio_rerio | 0 | 948 |
