C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: crooked neck pre-mRNA splicing factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000377327 CRNKL1-001 ENSG00000101343 9606 - 20:20034368-20056046 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Z5 CIL_0007Z5_0001 VISTA 20:19702996-20303586
CIL_0002MS CIL_0002MS_0001 CGP 20:20017116-20056046
CIL_0001TY CIL_0001TY_0001 CGP 20:20034368-20360702

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0006396 IEA RNA processing
GO:0006397 IEA mRNA processing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001818 Crnkl1-001 protein_coding Mus_musculus 0 2627
ENSMUST00000096093 Gm5989-201 processed_pseudogene Mus_musculus 0 2041
ENSMUST00000096092 Gm5301-201 processed_pseudogene Mus_musculus 0 2008
ENSMUST00000164674 Gm4782-201 protein_coding Mus_musculus 0 2008
ENSMUST00000168705 Gm8038-201 processed_pseudogene Mus_musculus 0 2002
ENSDART00000112689 crnkl1-201 protein_coding Danio_rerio 0 977

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