C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: crooked neck pre-mRNA splicing factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000536226 CRNKL1-007 ENSG00000101343 9606 - 20:20034374-20052466 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000536226
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000536226 3.768±0.00 2.333±0.00 3.482±0.00 4.344±0.54 3.419±0.59 5.068±0.00 2.926±0.97 2.863±2.30 1.951±0.00 3.922±1.91 5.123±2.49 7.507±2.99 5.454±1.62 11.211±1.93

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Z5 CIL_0007Z5_0001 VISTA 20:19702996-20303586
CIL_0002MS CIL_0002MS_0001 CGP 20:20017116-20056046
CIL_0001TY CIL_0001TY_0001 CGP 20:20034368-20360702

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000245 IDA spliceosomal complex assembly
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003723 IDA RNA binding
GO:0005515 IPI:IEA protein binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005681 IDA spliceosomal complex
GO:0005737 IEA cytoplasm
GO:0006396 IEA RNA processing
GO:0006397 IEA mRNA processing
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001818 Crnkl1-001 protein_coding Mus_musculus 0 2627
ENSMUST00000096093 Gm5989-201 processed_pseudogene Mus_musculus 0 2041
ENSMUST00000096092 Gm5301-201 processed_pseudogene Mus_musculus 0 2008
ENSMUST00000164674 Gm4782-201 protein_coding Mus_musculus 0 2008
ENSMUST00000168705 Gm8038-201 processed_pseudogene Mus_musculus 0 2002
ENSDART00000112689 crnkl1-201 protein_coding Danio_rerio 0 977

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