C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CUGBP, Elav-like family member 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000101489 CELF4 9606 - 18:37243047-37566037 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000334919 CELF4-002 37243047-37565641 protein_coding
  ENST00000361795 CELF4-023 37244968-37565765 protein_coding
  ENST00000420428 CELF4-201 37243047-37566037 protein_coding
  ENST00000586009 CELF4-016 37243047-37270920 protein_coding
  ENST00000587074 CELF4-010 37266533-37273584 processed_transcript
  ENST00000587449 CELF4-012 37528967-37565608 processed_transcript
  ENST00000587657 CELF4-015 37259180-37273043 protein_coding
  ENST00000587819 CELF4-008 37273101-37485857 protein_coding
  ENST00000587911 CELF4-017 37245004-37264754 protein_coding
  ENST00000587924 CELF4-007 37274865-37486034 protein_coding
  ENST00000588591 CELF4-013 37243047-37273043 protein_coding
  ENST00000588597 CELF4-003 37259044-37565651 protein_coding
  ENST00000589229 CELF4-009 37273109-37485747 protein_coding
  ENST00000589386 CELF4-011 37253855-37273043 protein_coding
  ENST00000590011 CELF4-018 37244834-37253981 processed_transcript
  ENST00000590112 CELF4-005 37244614-37485576 nonsense_mediated_decay
  ENST00000591282 CELF4-004 37253811-37565641 protein_coding
  ENST00000591287 CELF4-001 37243047-37565748 protein_coding
  ENST00000591421 CELF4-006 37266217-37273158 retained_intron
  ENST00000593271 CELF4-014 37253838-37273043 protein_coding
  ENST00000601019 CELF4-021 37244968-37565748 protein_coding
  ENST00000601392 CELF4-020 37273053-37565748 protein_coding
  ENST00000603232 CELF4-022 37244980-37565827 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000334919ENST00000420428ENST00000586009ENST00000587074ENST00000587449ENST00000588591ENST00000590011ENST00000591287ENST00000591421ENST00000601392ENST00000603232
Transcript ID Adipose Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000334919 N/A 3.187±0.00 N/A 0.163±0.00 N/A N/A N/A N/A N/A 0.119±0.00 N/A
ENST00000420428 0.018±0.00 N/A N/A N/A N/A 0.003±0.00 N/A 0.014±0.00 0.194±0.00 N/A 0.454±0.00
ENST00000586009 N/A N/A 0.064±0.00 0.266±0.00 N/A N/A 0.033±0.00 N/A 0.037±0.03 0.131±0.00 0.978±0.00
ENST00000587074 N/A N/A N/A N/A N/A 1.040±0.00 N/A N/A N/A N/A N/A
ENST00000587449 0.105±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588591 N/A 2.180±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590011 0.148±0.00 N/A N/A N/A 0.054±0.00 N/A 0.283±0.00 N/A N/A N/A N/A
ENST00000591287 N/A 5.103±2.14 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591421 N/A N/A N/A N/A N/A N/A 0.221±0.00 N/A N/A N/A N/A
ENST00000601392 N/A N/A N/A 0.891±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000603232 N/A 23.038±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002FC CIL_0002FC_0002 CGP 18:36829106-37566037
CIL_00092R CIL_00092R_0001 VISTA 18:36839423-37440757
CIL_0007MG CIL_0007MG_0001 UCNEbase 18:36900350-37243731
CIL_0008E3 CIL_0008E3_0001 VISTA 18:37183519-37784565
CIL_0003VI CIL_0003VI_0001 CGP 18:37243047-42087830

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000380 IDA alternative mRNA splicing, via spliceosome
GO:0000381 IDA regulation of alternative mRNA splicing, via spliceosome
GO:0000900 NAS translation repressor activity, nucleic acid binding
GO:0003676 IEA nucleic acid binding
GO:0003729 IEA mRNA binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006376 IEA mRNA splice site selection
GO:0007281 NAS germ cell development
GO:0009790 NAS embryo development
GO:0017148 NAS negative regulation of translation
GO:0042835 ISS BRE binding
GO:0048025 IEA negative regulation of mRNA splicing, via spliceosome
GO:0048026 IDA positive regulation of mRNA splicing, via spliceosome
GO:0090394 IEA negative regulation of excitatory postsynaptic membrane potential

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070045 celf4 CUGBP, Elav-like family member 4 protein_coding Danio_rerio
ENSMUSG00000024268 Celf4 CUGBP, Elav-like family member 4 protein_coding Mus_musculus

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