C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CUGBP, Elav-like family member 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000024268 Celf4 10090 - 18:25477632-25753983 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000025117 Celf4-201 25477632-25753983 protein_coding
  ENSMUST00000115816 Celf4-202 25477632-25753983 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025117ENSMUST00000115816
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025117 0.337±0.05 2.943±1.56 0.378±0.00 66.205±17.34 0.542±0.26 1.987±0.64 0.127±0.05 0.127±0.04 0.104±0.09 0.179±0.13 0.034±0.02 0.617±0.41 0.276±0.30 0.631±0.25
ENSMUST00000115816 N/A 1.297±0.36 0.170±0.07 15.494±0.43 0.296±0.04 0.556±0.11 N/A 0.090±0.03 0.061±0.05 0.132±0.05 N/A 0.189±0.07 N/A 0.389±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008E2 CIL_0008E2_0002 VISTA 18:24940595-25541640
CIL_00092R CIL_00092R_0002 VISTA 18:25077370-25678646
CIL_0002FC CIL_0002FC_0003 CGP 18:25168999-25753983
CIL_0007MG CIL_0007MG_0002 UCNEbase 18:25240836-25478294
CIL_0008E3 CIL_0008E3_0002 VISTA 18:25377414-25978414
CIL_0003VI CIL_0003VI_0002 CGP 18:25477632-30348126

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000380 IEA alternative mRNA splicing, via spliceosome
GO:0000381 IEA regulation of alternative mRNA splicing, via spliceosome
GO:0003729 IDA mRNA binding
GO:0005634 ISS nucleus
GO:0005737 IEA cytoplasm
GO:0006376 IDA mRNA splice site selection
GO:0042835 ISS BRE binding
GO:0048025 IMP negative regulation of mRNA splicing, via spliceosome
GO:0048026 ISS positive regulation of mRNA splicing, via spliceosome
GO:0090394 IMP negative regulation of excitatory postsynaptic membrane potential

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070045 celf4 CUGBP, Elav-like family member 4 protein_coding Danio_rerio
ENSG00000101489 CELF4 CUGBP, Elav-like family member 4 protein_coding Homo_sapiens

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