C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CUGBP, Elav-like family member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000420428 CELF4-201 ENSG00000101489 9606 - 18:37243047-37566037 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeLiverMuscleOvaryTestisENST00000420428
Transcript ID Adipose Liver Muscle Ovary Testis
ENST00000420428 0.018±0.00 0.003±0.00 0.014±0.00 0.194±0.00 0.454±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002FC CIL_0002FC_0002 CGP 18:36829106-37566037
CIL_00092R CIL_00092R_0001 VISTA 18:36839423-37440757
CIL_0007MG CIL_0007MG_0001 UCNEbase 18:36900350-37243731
CIL_0008E3 CIL_0008E3_0001 VISTA 18:37183519-37784565
CIL_0003VI CIL_0003VI_0001 CGP 18:37243047-42087830

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000380 IDA alternative mRNA splicing, via spliceosome
GO:0000381 IDA regulation of alternative mRNA splicing, via spliceosome
GO:0000900 NAS translation repressor activity, nucleic acid binding
GO:0003676 IEA nucleic acid binding
GO:0003729 IEA mRNA binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006376 IEA mRNA splice site selection
GO:0007281 NAS germ cell development
GO:0009790 NAS embryo development
GO:0017148 NAS negative regulation of translation
GO:0042835 ISS BRE binding
GO:0048025 IEA negative regulation of mRNA splicing, via spliceosome
GO:0048026 IDA positive regulation of mRNA splicing, via spliceosome
GO:0090394 IEA negative regulation of excitatory postsynaptic membrane potential

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025117 Celf4-201 protein_coding Mus_musculus 0 3840
ENSMUST00000115816 Celf4-202 protein_coding Mus_musculus 0 2224
ENSDART00000151297 celf4-002 protein_coding Danio_rerio 2.94273e-44 185

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