C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000103168 TAF1C 9606 - 16:84177847-84187070 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000341690 TAF1C-005 84177852-84187049 protein_coding
  ENST00000537450 TAF1C-009 84181496-84186989 retained_intron
  ENST00000541676 TAF1C-201 84177847-84187070 protein_coding
  ENST00000544090 TAF1C-006 84178749-84187039 retained_intron
  ENST00000561955 TAF1C-015 84182267-84187039 protein_coding
  ENST00000562330 TAF1C-018 84182032-84185052 retained_intron
  ENST00000562445 TAF1C-020 84181290-84181758 retained_intron
  ENST00000563428 TAF1C-007 84178781-84187033 nonsense_mediated_decay
  ENST00000564208 TAF1C-004 84177854-84187052 retained_intron
  ENST00000564345 TAF1C-011 84183120-84187063 protein_coding
  ENST00000564454 TAF1C-014 84183267-84187045 protein_coding
  ENST00000564774 TAF1C-008 84177854-84187020 retained_intron
  ENST00000565279 TAF1C-016 84182147-84187038 retained_intron
  ENST00000565544 TAF1C-012 84185158-84187052 processed_transcript
  ENST00000566183 TAF1C-019 84183273-84183751 retained_intron
  ENST00000566732 TAF1C-002 84178712-84187039 protein_coding
  ENST00000566903 TAF1C-010 84177877-84186981 nonsense_mediated_decay
  ENST00000567759 TAF1C-001 84177855-84187011 protein_coding
  ENST00000568265 TAF1C-021 84179122-84181418 protein_coding
  ENST00000569505 TAF1C-017 84182336-84187020 nonsense_mediated_decay
  ENST00000569609 TAF1C-013 84183138-84187045 nonsense_mediated_decay
  ENST00000570117 TAF1C-003 84178848-84187057 protein_coding
  ENST00000570270 TAF1C-022 84181370-84182176 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000341690ENST00000537450ENST00000541676ENST00000562330ENST00000563428ENST00000564208ENST00000564345ENST00000564774ENST00000566903ENST00000567759ENST00000568265ENST00000569609
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000341690 N/A N/A N/A N/A N/A N/A 0.459±0.00 N/A N/A N/A 8.595±0.00 0.983±0.00
ENST00000537450 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.584±0.00 N/A
ENST00000541676 N/A N/A 0.400±0.00 N/A N/A 1.529±0.00 N/A N/A 3.136±0.00 0.840±0.00 N/A N/A
ENST00000562330 N/A N/A N/A N/A N/A N/A N/A 0.365±0.00 N/A N/A N/A N/A
ENST00000563428 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.664±0.00
ENST00000564208 2.068±0.00 N/A N/A 4.021±0.00 N/A N/A N/A N/A N/A N/A 3.764±0.00 1.508±0.51
ENST00000564345 N/A N/A N/A 3.591±0.00 N/A 1.059±0.00 N/A N/A N/A N/A 3.913±0.00 N/A
ENST00000564774 N/A 9.553±0.00 2.905±0.00 N/A 1.253±0.99 1.728±0.00 3.140±0.00 0.483±0.00 1.889±1.10 N/A 4.371±3.86 1.249±0.18
ENST00000566903 N/A N/A 0.938±0.00 N/A 0.751±0.00 N/A N/A N/A N/A 1.227±0.00 N/A 2.497±0.00
ENST00000567759 3.388±0.00 N/A 2.147±0.00 N/A N/A 1.194±0.00 4.806±0.00 0.588±0.00 N/A N/A 5.224±0.00 1.439±0.07
ENST00000568265 N/A N/A N/A 5.760±0.00 N/A N/A 0.500±0.00 0.409±0.00 N/A N/A N/A 3.492±0.00
ENST00000569609 N/A N/A N/A N/A 4.883±0.00 N/A N/A N/A N/A 3.012±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004ZQ CIL_0004ZQ_0001 CGP 16:84122146-84178767
CIL_0002AR CIL_0002AR_0001 CGP 16:84145287-84187070
CIL_0002AS CIL_0002AS_0001 CGP 16:84177847-84197168

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IPI:IEA protein binding
GO:0005654 TAS nucleoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006360 TAS transcription from RNA polymerase I promoter
GO:0006361 TAS transcription initiation from RNA polymerase I promoter
GO:0006362 TAS transcription elongation from RNA polymerase I promoter
GO:0006363 TAS termination of RNA polymerase I transcription
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0010467 TAS gene expression

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000096310 TAF1C TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa protein_coding Danio_rerio
ENSMUSG00000031832 Taf1c TATA box binding protein (Tbp)-associated factor, RNA polymerase I, C protein_coding Mus_musculus

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