C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TATA box binding protein (Tbp)-associated factor, RNA polymerase I, C
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031832 Taf1c 10090 - 8:119597975-119605222 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000093099 Taf1c-001 119597975-119605222 protein_coding
  ENSMUST00000126547 Taf1c-003 119599628-119601578 processed_transcript
  ENSMUST00000131652 Taf1c-005 119598819-119599845 processed_transcript
  ENSMUST00000144379 Taf1c-004 119599387-119600713 retained_intron
  ENSMUST00000147964 Taf1c-002 119597975-119605222 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000093099ENSMUST00000147964
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000093099 3.856±0.33 8.256±2.08 4.339±1.05 6.192±4.12 10.144±1.47 9.842±1.60 1.761±0.59 3.543±0.68 2.837±2.26 5.318±0.70 2.086±0.14 9.433±4.08 5.172±1.69
ENSMUST00000147964 1.030±0.05 2.628±0.54 1.466±0.62 1.477±0.30 1.683±0.00 2.098±0.25 0.346±0.04 0.690±0.15 0.839±0.46 1.330±0.18 0.529±0.22 2.720±1.63 1.074±0.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004ZQ CIL_0004ZQ_0002 CGP 8:119561979-119598454
CIL_0002AR CIL_0002AR_0002 CGP 8:119575235-119605222
CIL_0002AS CIL_0002AS_0002 CGP 8:119597975-119616926

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000120 TAS RNA polymerase I transcription factor complex
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006360 TAS transcription from RNA polymerase I promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000096310 TAF1C TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa protein_coding Danio_rerio
ENSG00000103168 TAF1C TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa protein_coding Homo_sapiens

Loading