C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin family domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000103353 UBFD1 9606 + 16:23557362-23574389 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000395878 UBFD1-001 23557362-23574389 protein_coding
  ENST00000563366 UBFD1-006 23561665-23570857 processed_transcript
  ENST00000564106 UBFD1-008 23564460-23570710 processed_transcript
  ENST00000565634 UBFD1-007 23561833-23570575 retained_intron
  ENST00000566136 UBFD1-003 23564964-23570858 retained_intron
  ENST00000566669 UBFD1-004 23557767-23559531 retained_intron
  ENST00000567212 UBFD1-002 23557721-23574387 protein_coding
  ENST00000567264 UBFD1-005 23557727-23559840 protein_coding
  ENST00000569919 UBFD1-009 23559028-23559868 retained_intron
  ENST00000571064 UBFD1-010 23557737-23564090 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000395878ENST00000567212ENST00000571064
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000395878 N/A N/A 1.584±0.00 1.597±0.00 2.230±0.00 N/A 1.035±0.00 N/A 1.012±0.00 N/A N/A N/A N/A N/A
ENST00000567212 4.396±0.00 3.718±0.00 2.422±0.00 6.303±0.41 5.301±1.61 8.408±0.00 4.681±3.43 6.610±3.46 3.556±1.00 4.579±0.40 13.682±7.68 5.416±2.78 6.240±0.24 18.925±0.00
ENST00000571064 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.871±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006D4 CIL_0006D4_0001 CGP 16:23463542-23557731
CIL_0006D3 CIL_0006D3_0001 CGP 16:23522014-23574389
CIL_0006D2 CIL_0006D2_0001 CGP 16:23557362-23596356

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059622 ubfd1 ubiquitin family domain containing 1 protein_coding Danio_rerio
ENSMUSG00000030870 Ubfd1 ubiquitin family domain containing 1 protein_coding Mus_musculus

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