C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006D2_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000103353-ENSG00000004779 CGP 9606 16:23557362-23596356
GeneTranscriptPositionBiotype
ENSG00000004779 (NDUFAB1)
NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa 		ENST00000007516 (NDUFAB1-001) 23581002-23596356 protein_coding
ENST00000484769 (NDUFAB1-002) 23581033-23596303 nonsense_mediated_decay
ENST00000562133 (NDUFAB1-004) 23581014-23596277 protein_coding
ENST00000567761 (NDUFAB1-003) 23582335-23591153 protein_coding
ENST00000570319 (NDUFAB1-005) 23581871-23596291 protein_coding
ENSG00000103353 (UBFD1)
ubiquitin family domain containing 1 		ENST00000395878 (UBFD1-001) 23557362-23574389 protein_coding
ENST00000563366 (UBFD1-006) 23561665-23570857 processed_transcript
ENST00000564106 (UBFD1-008) 23564460-23570710 processed_transcript
ENST00000565634 (UBFD1-007) 23561833-23570575 retained_intron
ENST00000566136 (UBFD1-003) 23564964-23570858 retained_intron
ENST00000566669 (UBFD1-004) 23557767-23559531 retained_intron
ENST00000567212 (UBFD1-002) 23557721-23574387 protein_coding
ENST00000567264 (UBFD1-005) 23557727-23559840 protein_coding
ENST00000569919 (UBFD1-009) 23559028-23559868 retained_intron
ENST00000571064 (UBFD1-010) 23557737-23564090 processed_transcript
ENSG00000103356 (EARS2)
glutamyl-tRNA synthetase 2, mitochondrial 		ENST00000449606 (EARS2-201) 23522014-23557375 protein_coding
ENST00000561859 (EARS2-014) 23544541-23557350 processed_transcript
ENST00000562402 (EARS2-012) 23532748-23535449 retained_intron
ENST00000562581 (EARS2-007) 23544514-23557353 nonsense_mediated_decay
ENST00000562799 (EARS2-004) 23552207-23557350 retained_intron
ENST00000563232 (EARS2-003) 23525024-23557344 protein_coding
ENST00000563459 (EARS2-001) 23522017-23557350 protein_coding
ENST00000563499 (EARS2-011) 23552192-23557355 nonsense_mediated_decay
ENST00000564461 (EARS2-010) 23544508-23557054 processed_transcript
ENST00000564501 (EARS2-017) 23525020-23557731 protein_coding
ENST00000564668 (EARS2-009) 23535320-23557364 nonsense_mediated_decay
ENST00000564759 (EARS2-013) 23523047-23523645 processed_transcript
ENST00000564776 (EARS2-016) 23523037-23524084 processed_transcript
ENST00000564987 (EARS2-006) 23522624-23550842 processed_transcript
ENST00000564997 (EARS2-015) 23544565-23557364 nonsense_mediated_decay
ENST00000565344 (EARS2-008) 23532547-23535218 retained_intron
ENST00000566017 (EARS2-005) 23535274-23545262 processed_transcript
ENSG00000260751 (CTD-2196E14.6)
 ENST00000568262 (CTD-2196E14.6-001) 23568673-23569696 sense_intronic
CIL_0006D2_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030870-ENSMUSG00000030869 CGP 10090 7:122067175-122101886
GeneTranscriptPositionBiotype
ENSMUSG00000030869 (Ndufab1)
NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 		ENSMUST00000033157 (Ndufab1-001) 122085403-122101886 protein_coding
ENSMUST00000106471 (Ndufab1-006) 122090831-122101736 protein_coding
ENSMUST00000123296 (Ndufab1-002) 122090056-122101851 protein_coding
ENSMUST00000130857 (Ndufab1-008) 122090818-122093092 retained_intron
ENSMUST00000130904 (Ndufab1-005) 122090833-122093782 retained_intron
ENSMUST00000139456 (Ndufab1-007) 122091526-122101735 protein_coding
ENSMUST00000145863 (Ndufab1-009) 122094032-122101347 processed_transcript
ENSMUST00000146022 (Ndufab1-003) 122096463-122101828 retained_intron
ENSMUST00000146964 (Ndufab1-010) 122088458-122091787 retained_intron
ENSMUST00000153173 (Ndufab1-004) 122093125-122101706 retained_intron
ENSMUSG00000030870 (Ubfd1)
ubiquitin family domain containing 1 		ENSMUST00000033158 (Ubfd1-001) 122067175-122082194 protein_coding
ENSMUST00000124733 (Ubfd1-004) 122067447-122068979 processed_transcript
ENSMUST00000133390 (Ubfd1-003) 122067440-122071406 retained_intron
ENSMUST00000148060 (Ubfd1-002) 122067208-122077632 retained_intron
ENSMUST00000153640 (Ubfd1-005) 122068899-122078611 processed_transcript
ENSMUSG00000030871 (Ears2)
glutamyl-tRNA synthetase 2 (mitochondrial)(putative) 		ENSMUST00000033159 (Ears2-001) 122038821-122067263 protein_coding
ENSMUST00000147397 (Ears2-003) 122038821-122067070 retained_intron
ENSMUST00000151530 (Ears2-002) 122037213-122067011 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006D2_0001ENSG00000004779ENST00000007516ENST00000484769ENST00000562133ENSG00000103353ENST00000395878ENST00000567212ENST00000571064ENSG00000103356ENST00000449606ENST00000563232ENST00000563459ENST00000564987ENSG00000260751ENST00000568262CIL_0006D2_0002ENSMUSG00000030869ENSMUST00000033157ENSMUST00000106471ENSMUST00000123296ENSMUST00000130857ENSMUST00000130904ENSMUST00000139456ENSMUST00000146022ENSMUST00000153173ENSMUSG00000030870ENSMUST00000033158ENSMUST00000124733ENSMUST00000148060ENSMUST00000153640ENSMUSG00000030871ENSMUST00000033159ENSMUST00000147397ENSMUST00000151530
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000004779 ENST00000007516 21.354±0.00 31.280±0.00 6.754±0.00 40.178±3.64 30.455±20.29 26.774±10.28 112.210±63.09 30.510±7.66 31.375±20.83 17.595±8.90 47.497±5.51 50.796±33.59 83.125±28.71 64.928±32.08
ENST00000484769 N/A N/A N/A N/A 1.926±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562133 N/A 8.485±0.00 N/A 11.451±0.00 N/A 15.113±0.00 N/A 28.973±0.00 N/A 5.349±0.00 N/A 18.188±0.00 N/A 16.872±0.00
ENST00000567761 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570319 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000103353 ENST00000395878 N/A N/A 1.584±0.00 1.597±0.00 2.230±0.00 N/A 1.035±0.00 N/A 1.012±0.00 N/A N/A N/A N/A N/A
ENST00000563366 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564106 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565634 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566136 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566669 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567212 4.396±0.00 3.718±0.00 2.422±0.00 6.303±0.41 5.301±1.61 8.408±0.00 4.681±3.43 6.610±3.46 3.556±1.00 4.579±0.40 13.682±7.68 5.416±2.78 6.240±0.24 18.925±0.00
ENST00000567264 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569919 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000571064 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.871±0.00 N/A N/A
ENSG00000103356 ENST00000449606 3.375±0.00 2.377±0.00 1.211±0.00 3.040±0.00 N/A 2.743±0.00 5.304±0.00 7.398±0.00 5.152±0.00 2.668±0.00 N/A 4.347±1.98 6.082±2.04 N/A
ENST00000561859 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562402 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562581 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562799 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563232 N/A N/A N/A N/A N/A N/A 1.935±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000563459 N/A N/A N/A N/A 1.814±0.00 N/A N/A N/A 1.948±0.00 1.803±0.00 N/A N/A N/A N/A
ENST00000563499 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564461 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564501 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564668 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564759 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564776 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564987 N/A 2.418±0.00 N/A N/A 4.899±0.00 N/A 1.282±0.00 1.845±0.00 N/A N/A 4.351±0.00 N/A N/A 13.644±0.00
ENST00000564997 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565344 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566017 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000260751 ENST00000568262 0.280±0.00 1.228±0.00 0.141±0.00 0.864±0.00 0.701±0.25 0.217±0.00 0.190±0.06 0.535±0.00 0.304±0.10 0.238±0.00 0.242±0.21 0.569±0.16 0.048±0.00 1.211±1.07
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030869 ENSMUST00000033157 7.124±0.19 N/A 2.134±0.24 1.862±0.18 3.861±2.08 N/A 5.540±0.07 N/A 2.831±0.64 3.562±0.22 3.742±0.43 2.023±0.27 3.059±0.60 N/A
ENSMUST00000106471 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 31.076±0.00 31.318±0.07 36.101±0.00 N/A
ENSMUST00000123296 39.362±0.00 355.697±255.54 N/A N/A 223.962±136.70 102.462±35.99 N/A 115.496±80.57 3.537±0.00 26.046±10.66 14.920±0.00 128.140±86.86 N/A 8.136±0.00
ENSMUST00000130857 N/A N/A 4.504±1.05 5.296±0.00 N/A N/A N/A N/A 3.498±0.55 N/A N/A 5.299±0.84 N/A N/A
ENSMUST00000130904 N/A N/A 33.784±4.61 104.590±103.58 25.500±0.00 N/A 80.449±2.08 N/A 55.174±11.67 N/A 61.791±9.56 112.837±89.20 121.254±112.53 57.196±0.00
ENSMUST00000139456 N/A N/A N/A 72.429±0.00 N/A N/A N/A N/A 48.053±0.00 N/A 105.301±40.72 75.862±0.00 89.508±40.10 21.503±9.41
ENSMUST00000145863 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146022 178.299±49.85 1206.641±567.10 N/A 27.060±0.00 335.093±39.07 248.026±37.41 273.589±37.21 293.518±69.97 114.453±36.64 87.822±17.70 N/A 167.767±112.78 N/A 34.482±11.20
ENSMUST00000146964 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153173 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.609±0.00 8.711±0.00 N/A
ENSMUSG00000030870 ENSMUST00000033158 10.983±2.33 23.269±4.20 12.653±1.74 23.944±13.14 13.905±5.67 11.080±3.76 8.876±0.66 12.247±0.84 12.078±2.75 13.641±4.58 4.475±0.40 27.752±11.84 25.814±11.26 5.801±2.75
ENSMUST00000124733 N/A 36.803±12.45 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 142.319±32.91 15.198±0.00
ENSMUST00000133390 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148060 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.990±1.52
ENSMUST00000153640 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 78.162±4.37 6.767±0.00
ENSMUSG00000030871 ENSMUST00000033159 7.444±1.35 17.504±1.88 7.141±1.34 N/A 7.328±0.94 6.191±0.43 5.383±0.38 5.211±0.64 6.775±0.96 N/A 3.767±0.63 14.073±3.74 N/A 3.586±0.99
ENSMUST00000147397 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.119±0.00 N/A 0.954±0.00
ENSMUST00000151530 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.838±0.00 N/A N/A

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