C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin family domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000395878 UBFD1-001 ENSG00000103353 9606 + 16:23557362-23574389 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartLiverENST00000395878
Transcript ID Bladder Brain Breast Heart Liver
ENST00000395878 1.584±0.00 1.597±0.00 2.230±0.00 1.035±0.00 1.012±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006D4 CIL_0006D4_0001 CGP 16:23463542-23557731
CIL_0006D3 CIL_0006D3_0001 CGP 16:23522014-23574389
CIL_0006D2 CIL_0006D2_0001 CGP 16:23557362-23596356

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033158 Ubfd1-001 protein_coding Mus_musculus 0 1938
ENSMUST00000133390 Ubfd1-003 retained_intron Mus_musculus 0 739
ENSMUST00000148060 Ubfd1-002 retained_intron Mus_musculus 0 691
ENSMUST00000124733 Ubfd1-004 processed_transcript Mus_musculus 0 647
ENSMUST00000153640 Ubfd1-005 processed_transcript Mus_musculus 0 429

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