C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006D4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000103365-ENSG00000103356 CGP 9606 16:23463542-23557731
GeneTranscriptPositionBiotype
ENSG00000103353 (UBFD1)
ubiquitin family domain containing 1 		ENST00000395878 (UBFD1-001) 23557362-23574389 protein_coding
ENST00000563366 (UBFD1-006) 23561665-23570857 processed_transcript
ENST00000564106 (UBFD1-008) 23564460-23570710 processed_transcript
ENST00000565634 (UBFD1-007) 23561833-23570575 retained_intron
ENST00000566136 (UBFD1-003) 23564964-23570858 retained_intron
ENST00000566669 (UBFD1-004) 23557767-23559531 retained_intron
ENST00000567212 (UBFD1-002) 23557721-23574387 protein_coding
ENST00000567264 (UBFD1-005) 23557727-23559840 protein_coding
ENST00000569919 (UBFD1-009) 23559028-23559868 retained_intron
ENST00000571064 (UBFD1-010) 23557737-23564090 processed_transcript
ENSG00000103356 (EARS2)
glutamyl-tRNA synthetase 2, mitochondrial 		ENST00000449606 (EARS2-201) 23522014-23557375 protein_coding
ENST00000561859 (EARS2-014) 23544541-23557350 processed_transcript
ENST00000562402 (EARS2-012) 23532748-23535449 retained_intron
ENST00000562581 (EARS2-007) 23544514-23557353 nonsense_mediated_decay
ENST00000562799 (EARS2-004) 23552207-23557350 retained_intron
ENST00000563232 (EARS2-003) 23525024-23557344 protein_coding
ENST00000563459 (EARS2-001) 23522017-23557350 protein_coding
ENST00000563499 (EARS2-011) 23552192-23557355 nonsense_mediated_decay
ENST00000564461 (EARS2-010) 23544508-23557054 processed_transcript
ENST00000564501 (EARS2-017) 23525020-23557731 protein_coding
ENST00000564668 (EARS2-009) 23535320-23557364 nonsense_mediated_decay
ENST00000564759 (EARS2-013) 23523047-23523645 processed_transcript
ENST00000564776 (EARS2-016) 23523037-23524084 processed_transcript
ENST00000564987 (EARS2-006) 23522624-23550842 processed_transcript
ENST00000564997 (EARS2-015) 23544565-23557364 nonsense_mediated_decay
ENST00000565344 (EARS2-008) 23532547-23535218 retained_intron
ENST00000566017 (EARS2-005) 23535274-23545262 processed_transcript
ENSG00000103365 (GGA2)
golgi-associated, gamma adaptin ear containing, ARF binding protein 2 		ENST00000309859 (GGA2-001) 23463542-23510494 protein_coding
ENST00000562117 (GGA2-009) 23493431-23510389 protein_coding
ENST00000562944 (GGA2-006) 23493423-23510448 protein_coding
ENST00000563047 (GGA2-018) 23493360-23510424 nonsense_mediated_decay
ENST00000563494 (GGA2-010) 23491685-23510492 nonsense_mediated_decay
ENST00000566547 (GGA2-004) 23495343-23510487 retained_intron
ENST00000566651 (GGA2-005) 23494112-23495778 retained_intron
ENST00000566685 (GGA2-016) 23466685-23467413 processed_transcript
ENST00000567201 (GGA2-017) 23486085-23494402 retained_intron
ENST00000567339 (GGA2-015) 23466590-23467535 processed_transcript
ENST00000567468 (GGA2-002) 23464323-23510424 protein_coding
ENST00000568799 (GGA2-007) 23491676-23510494 retained_intron
ENST00000568922 (GGA2-014) 23466591-23469582 retained_intron
ENST00000569182 (GGA2-013) 23474953-23480423 processed_transcript
ENST00000569189 (GGA2-008) 23491777-23510488 nonsense_mediated_decay
ENST00000569300 (GGA2-012) 23491745-23521995 protein_coding
ENST00000570111 (GGA2-011) 23488680-23510464 nonsense_mediated_decay
ENSG00000260247 (SUB1P4)
SUB1 pseudogene 4 		ENST00000566062 (SUB1P4-001) 23537061-23537556 processed_pseudogene
ENSG00000261528 (AC002400.1)
 ENST00000569310 (AC002400.1-001) 23500905-23501630 processed_pseudogene
CIL_0006D4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030872-ENSMUSG00000030871 CGP 10090 7:121986722-122067263
GeneTranscriptPositionBiotype
ENSMUSG00000030870 (Ubfd1)
ubiquitin family domain containing 1 		ENSMUST00000033158 (Ubfd1-001) 122067175-122082194 protein_coding
ENSMUST00000124733 (Ubfd1-004) 122067447-122068979 processed_transcript
ENSMUST00000133390 (Ubfd1-003) 122067440-122071406 retained_intron
ENSMUST00000148060 (Ubfd1-002) 122067208-122077632 retained_intron
ENSMUST00000153640 (Ubfd1-005) 122068899-122078611 processed_transcript
ENSMUSG00000030871 (Ears2)
glutamyl-tRNA synthetase 2 (mitochondrial)(putative) 		ENSMUST00000033159 (Ears2-001) 122038821-122067263 protein_coding
ENSMUST00000147397 (Ears2-003) 122038821-122067070 retained_intron
ENSMUST00000151530 (Ears2-002) 122037213-122067011 retained_intron
ENSMUSG00000030872 (Gga2)
golgi associated, gamma adaptin ear containing, ARF binding protein 2 		ENSMUST00000033160 (Gga2-001) 121986722-122021222 protein_coding
ENSMUST00000124566 (Gga2-003) 121986722-122021167 nonsense_mediated_decay
ENSMUST00000131081 (Gga2-006) 122010423-122021187 retained_intron
ENSMUST00000138441 (Gga2-005) 121996596-121999049 retained_intron
ENSMUST00000144779 (Gga2-004) 121988765-122002491 retained_intron
ENSMUST00000145277 (Gga2-002) 122004747-122021180 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006D4_0001ENSG00000103353ENST00000395878ENST00000567212ENST00000571064ENSG00000103356ENST00000449606ENST00000563232ENST00000563459ENST00000564987ENSG00000103365ENST00000309859ENST00000567201ENST00000568799ENST00000568922ENSG00000260247ENST00000566062ENSG00000261528ENST00000569310CIL_0006D4_0002ENSMUSG00000030870ENSMUST00000033158ENSMUST00000124733ENSMUST00000148060ENSMUST00000153640ENSMUSG00000030871ENSMUST00000033159ENSMUST00000147397ENSMUST00000151530ENSMUSG00000030872ENSMUST00000033160ENSMUST00000124566ENSMUST00000131081ENSMUST00000144779
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000103353 ENST00000395878 N/A N/A 1.584±0.00 1.597±0.00 2.230±0.00 N/A 1.035±0.00 N/A 1.012±0.00 N/A N/A N/A N/A N/A
ENST00000563366 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564106 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565634 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566136 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566669 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567212 4.396±0.00 3.718±0.00 2.422±0.00 6.303±0.41 5.301±1.61 8.408±0.00 4.681±3.43 6.610±3.46 3.556±1.00 4.579±0.40 13.682±7.68 5.416±2.78 6.240±0.24 18.925±0.00
ENST00000567264 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569919 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000571064 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.871±0.00 N/A N/A
ENSG00000103356 ENST00000449606 3.375±0.00 2.377±0.00 1.211±0.00 3.040±0.00 N/A 2.743±0.00 5.304±0.00 7.398±0.00 5.152±0.00 2.668±0.00 N/A 4.347±1.98 6.082±2.04 N/A
ENST00000561859 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562402 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562581 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562799 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563232 N/A N/A N/A N/A N/A N/A 1.935±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000563459 N/A N/A N/A N/A 1.814±0.00 N/A N/A N/A 1.948±0.00 1.803±0.00 N/A N/A N/A N/A
ENST00000563499 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564461 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564501 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564668 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564759 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564776 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564987 N/A 2.418±0.00 N/A N/A 4.899±0.00 N/A 1.282±0.00 1.845±0.00 N/A N/A 4.351±0.00 N/A N/A 13.644±0.00
ENST00000564997 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565344 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566017 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000103365 ENST00000309859 3.283±0.00 13.067±0.00 N/A 3.001±1.75 4.928±2.57 3.958±1.91 3.323±2.58 6.311±5.08 2.031±1.50 7.017±0.00 5.359±5.18 7.689±4.34 8.653±2.08 7.059±2.16
ENST00000562117 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562944 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563047 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563494 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566547 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566651 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566685 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567201 N/A N/A 9.224±0.00 N/A N/A 5.800±0.00 2.182±0.00 4.883±0.00 5.250±0.00 10.929±0.00 1.165±0.00 N/A N/A N/A
ENST00000567339 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567468 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568799 N/A N/A N/A 2.036±0.00 6.709±0.00 3.088±0.00 N/A N/A N/A 3.588±0.00 N/A 2.589±0.00 N/A N/A
ENST00000568922 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.607±0.00 N/A N/A
ENST00000569182 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569189 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569300 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570111 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000260247 ENST00000566062 N/A 0.133±0.00 N/A N/A 0.031±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.070±0.02
ENSG00000261528 ENST00000569310 0.177±0.00 0.389±0.00 0.938±0.00 0.773±0.43 1.435±1.39 0.741±0.00 0.106±0.06 N/A 0.780±0.00 N/A N/A 0.050±0.01 0.070±0.00 0.219±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030870 ENSMUST00000033158 10.983±2.33 23.269±4.20 12.653±1.74 23.944±13.14 13.905±5.67 11.080±3.76 8.876±0.66 12.247±0.84 12.078±2.75 13.641±4.58 4.475±0.40 27.752±11.84 25.814±11.26 5.801±2.75
ENSMUST00000124733 N/A 36.803±12.45 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 142.319±32.91 15.198±0.00
ENSMUST00000133390 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148060 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.990±1.52
ENSMUST00000153640 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 78.162±4.37 6.767±0.00
ENSMUSG00000030871 ENSMUST00000033159 7.444±1.35 17.504±1.88 7.141±1.34 N/A 7.328±0.94 6.191±0.43 5.383±0.38 5.211±0.64 6.775±0.96 N/A 3.767±0.63 14.073±3.74 N/A 3.586±0.99
ENSMUST00000147397 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.119±0.00 N/A 0.954±0.00
ENSMUST00000151530 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.838±0.00 N/A N/A
ENSMUSG00000030872 ENSMUST00000033160 N/A 1.062±0.00 3.050±0.25 3.250±1.30 N/A 0.829±0.13 N/A N/A 1.526±0.78 0.826±0.00 0.928±0.34 2.117±0.81 N/A 0.402±0.12
ENSMUST00000124566 3.120±0.63 0.948±0.00 7.009±0.30 2.476±1.53 2.773±0.39 0.852±0.18 1.928±0.06 3.214±0.77 2.846±2.25 1.853±0.38 1.140±0.42 4.353±0.50 16.878±7.39 0.687±0.21
ENSMUST00000131081 15.419±0.00 16.642±4.23 N/A N/A 29.113±2.40 5.546±1.59 N/A 11.507±0.00 3.501±0.27 10.326±1.42 N/A 41.843±9.93 N/A N/A
ENSMUST00000138441 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144779 19.372±7.20 7.399±0.88 18.359±0.87 13.935±8.89 19.809±5.46 4.478±0.53 6.540±1.40 12.777±3.53 9.043±5.98 7.568±2.48 3.709±0.71 17.949±6.40 45.812±31.45 2.467±0.80
ENSMUST00000145277 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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