C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin family domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030870 Ubfd1 10090 + 7:122067175-122082194 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000033158 Ubfd1-001 122067175-122082194 protein_coding
  ENSMUST00000124733 Ubfd1-004 122067447-122068979 processed_transcript
  ENSMUST00000133390 Ubfd1-003 122067440-122071406 retained_intron
  ENSMUST00000148060 Ubfd1-002 122067208-122077632 retained_intron
  ENSMUST00000153640 Ubfd1-005 122068899-122078611 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033158ENSMUST00000124733ENSMUST00000148060ENSMUST00000153640
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033158 10.983±2.33 23.269±4.20 12.653±1.74 23.944±13.14 13.905±5.67 11.080±3.76 8.876±0.66 12.247±0.84 12.078±2.75 13.641±4.58 4.475±0.40 27.752±11.84 25.814±11.26 5.801±2.75
ENSMUST00000124733 N/A 36.803±12.45 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 142.319±32.91 15.198±0.00
ENSMUST00000148060 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.990±1.52
ENSMUST00000153640 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 78.162±4.37 6.767±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006D4 CIL_0006D4_0002 CGP 7:121986722-122067263
CIL_0006D3 CIL_0006D3_0002 CGP 7:122037213-122082194
CIL_0006D2 CIL_0006D2_0002 CGP 7:122067175-122101886

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059622 ubfd1 ubiquitin family domain containing 1 protein_coding Danio_rerio
ENSG00000103353 UBFD1 ubiquitin family domain containing 1 protein_coding Homo_sapiens

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