C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: GA binding protein transcription factor, beta subunit 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000104064 GABPB1 9606 - 15:50275392-50355408 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000220429 GABPB1-005 50277263-50355153 protein_coding
  ENST00000359031 GABPB1-201 50285882-50355408 protein_coding
  ENST00000380877 GABPB1-001 50275392-50355408 protein_coding
  ENST00000396464 GABPB1-002 50285880-50355198 protein_coding
  ENST00000429662 GABPB1-004 50285880-50355153 protein_coding
  ENST00000543881 GABPB1-006 50278402-50355124 protein_coding
  ENST00000558335 GABPB1-009 50303973-50327329 protein_coding
  ENST00000558970 GABPB1-008 50303974-50355191 protein_coding
  ENST00000559100 GABPB1-010 50301113-50303999 retained_intron
  ENST00000560825 GABPB1-007 50285894-50355202 protein_coding
  ENST00000561010 GABPB1-012 50278542-50301315 protein_coding
  ENST00000615671 GABPB1-011 50348936-50355201 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000220429ENST00000380877ENST00000396464ENST00000543881ENST00000615671
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000220429 4.585±0.00 7.288±0.00 N/A 2.199±0.00 3.358±0.00 2.866±1.05 1.268±0.50 2.725±0.00 1.791±0.29 2.715±1.08 1.519±0.28 3.596±1.10 3.592±0.81 4.708±0.00
ENST00000380877 N/A N/A N/A 0.769±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000396464 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.462±0.00 N/A
ENST00000543881 N/A N/A N/A N/A 2.523±0.00 N/A N/A 1.631±0.00 N/A N/A N/A N/A N/A N/A
ENST00000615671 2.134±0.00 2.961±0.00 0.837±0.00 1.606±0.37 1.631±0.19 1.441±0.10 0.586±0.34 0.946±0.16 0.977±0.24 1.513±0.43 0.494±0.26 1.575±0.20 1.253±0.24 1.605±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002E6 CIL_0002E6_0001 CGP 15:50241947-50355408
CIL_00070V CIL_00070V_0001 CGP 15:50275392-50514419

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046982 IDA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000089786 GA binding protein transcription factor, beta subunit 1 protein_coding Danio_rerio
ENSMUSG00000027361 Gabpb1 GA repeat binding protein, beta 1 protein_coding Mus_musculus

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