C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002E6_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000140287-ENSG00000104064 CGP 9606 15:50241947-50355408
GeneTranscriptPositionBiotype
ENSG00000104064 (GABPB1)
GA binding protein transcription factor, beta subunit 1 		ENST00000220429 (GABPB1-005) 50277263-50355153 protein_coding
ENST00000359031 (GABPB1-201) 50285882-50355408 protein_coding
ENST00000380877 (GABPB1-001) 50275392-50355408 protein_coding
ENST00000396464 (GABPB1-002) 50285880-50355198 protein_coding
ENST00000429662 (GABPB1-004) 50285880-50355153 protein_coding
ENST00000543881 (GABPB1-006) 50278402-50355124 protein_coding
ENST00000558335 (GABPB1-009) 50303973-50327329 protein_coding
ENST00000558970 (GABPB1-008) 50303974-50355191 protein_coding
ENST00000559100 (GABPB1-010) 50301113-50303999 retained_intron
ENST00000560825 (GABPB1-007) 50285894-50355202 protein_coding
ENST00000561010 (GABPB1-012) 50278542-50301315 protein_coding
ENST00000615671 (GABPB1-011) 50348936-50355201 processed_transcript
ENSG00000140287 (HDC)
histidine decarboxylase 		ENST00000267845 (HDC-001) 50241947-50266026 protein_coding
ENST00000543581 (HDC-004) 50242013-50265666 protein_coding
ENST00000558679 (HDC-003) 50253726-50265965 retained_intron
ENST00000558761 (HDC-002) 50252920-50265726 retained_intron
ENST00000559190 (HDC-008) 50253124-50263315 retained_intron
ENST00000559683 (HDC-007) 50254552-50263429 protein_coding
ENST00000559816 (HDC-005) 50241947-50253305 retained_intron
ENSG00000241175 (RN7SL494P)
RNA, 7SL, cytoplasmic 494, pseudogene 		ENST00000461517 (RN7SL494P-201) 50244628-50244931 misc_RNA
ENSG00000271819 (U6)
U6 spliceosomal RNA 		ENST00000607728 (U6.1-230) 50347423-50347529 snRNA
CIL_0002E6_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027360-ENSMUSG00000027361 CGP 10090 2:126593667-126676337
GeneTranscriptPositionBiotype
ENSMUSG00000027360 (Hdc)
histidine decarboxylase 		ENSMUST00000028838 (Hdc-001) 126593667-126618678 protein_coding
ENSMUST00000124396 (Hdc-004) 126594584-126598261 processed_transcript
ENSMUST00000132382 (Hdc-003) 126604315-126607641 processed_transcript
ENSMUST00000138752 (Hdc-002) 126600234-126618661 retained_intron
ENSMUST00000148591 (Hdc-005) 126616173-126619299 processed_transcript
ENSMUSG00000088200 (Gm23753)
predicted gene, 23753 		ENSMUST00000157575 (Gm23753-201) 126634539-126634687 snRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002E6_0001ENSG00000104064ENST00000220429ENST00000359031ENST00000380877ENST00000396464ENST00000429662ENST00000543881ENST00000558335ENST00000558970ENST00000559100ENST00000560825ENST00000561010ENST00000615671ENSG00000140287ENST00000267845ENST00000543581ENST00000558679ENST00000558761ENST00000559190ENST00000559683ENST00000559816ENSG00000241175ENST00000461517ENSG00000271819ENST00000607728CIL_0002E6_0002ENSMUSG00000027360ENSMUST00000028838ENSMUST00000124396ENSMUST00000132382ENSMUST00000138752ENSMUST00000148591ENSMUSG00000088200ENSMUST00000157575
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002E6_0001ENSG00000104064ENST00000220429ENST00000380877ENST00000396464ENST00000543881ENST00000615671ENSG00000140287ENST00000267845ENST00000543581ENST00000558679ENST00000558761ENST00000559190ENST00000559683ENST00000559816ENSG00000241175ENST00000461517ENSG00000271819ENST00000607728CIL_0002E6_0002ENSMUSG00000027360ENSMUST00000028838ENSMUST00000124396ENSMUST00000138752ENSMUSG00000088200ENSMUST00000157575
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000104064 ENST00000220429 4.585±0.00 7.288±0.00 N/A 2.199±0.00 3.358±0.00 2.866±1.05 1.268±0.50 2.725±0.00 1.791±0.29 2.715±1.08 1.519±0.28 3.596±1.10 3.592±0.81 4.708±0.00
ENST00000359031 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000380877 N/A N/A N/A 0.769±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000396464 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.462±0.00 N/A
ENST00000429662 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000543881 N/A N/A N/A N/A 2.523±0.00 N/A N/A 1.631±0.00 N/A N/A N/A N/A N/A N/A
ENST00000558335 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558970 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559100 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560825 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561010 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000615671 2.134±0.00 2.961±0.00 0.837±0.00 1.606±0.37 1.631±0.19 1.441±0.10 0.586±0.34 0.946±0.16 0.977±0.24 1.513±0.43 0.494±0.26 1.575±0.20 1.253±0.24 1.605±0.00
ENSG00000140287 ENST00000267845 N/A N/A N/A 0.049±0.00 0.259±0.00 N/A N/A N/A 0.116±0.00 N/A N/A N/A N/A N/A
ENST00000543581 N/A N/A N/A 0.045±0.00 N/A N/A 0.135±0.00 0.207±0.00 N/A 3.235±0.00 N/A 0.063±0.00 0.124±0.00 0.382±0.05
ENST00000558679 N/A N/A N/A 0.119±0.00 0.057±0.00 0.240±0.00 N/A 0.136±0.00 0.253±0.00 N/A N/A N/A N/A N/A
ENST00000558761 0.048±0.00 N/A N/A N/A 0.329±0.00 N/A N/A N/A N/A 0.706±0.00 N/A N/A 0.070±0.00 N/A
ENST00000559190 N/A 1.137±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.192±0.16 N/A 0.372±0.00
ENST00000559683 0.254±0.00 N/A N/A N/A N/A 1.324±0.00 N/A N/A 0.352±0.00 N/A N/A N/A 0.245±0.00 N/A
ENST00000559816 0.146±0.00 1.600±0.00 0.129±0.00 N/A 0.233±0.05 N/A 0.026±0.01 0.032±0.00 0.231±0.00 4.635±0.00 0.280±0.00 0.678±0.00 0.056±0.04 0.514±0.06
ENSG00000241175 ENST00000461517 0.128±0.00 0.402±0.00 N/A N/A N/A 0.851±0.00 N/A N/A N/A 0.269±0.00 N/A N/A N/A N/A
ENSG00000271819 ENST00000607728 0.556±0.00 1.186±0.00 N/A 0.388±0.00 N/A N/A N/A N/A N/A 1.657±0.00 N/A 14.086±0.00 N/A 0.173±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027360 ENSMUST00000028838 18.225±17.12 5.025±1.11 0.089±0.05 0.564±0.08 1.139±0.32 0.307±0.09 0.561±0.21 4.259±1.01 2.354±2.03 34.448±0.60 0.105±0.03 62.451±20.14 0.547±0.48 6.433±2.47
ENSMUST00000124396 N/A N/A N/A 0.568±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132382 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138752 N/A N/A N/A N/A N/A N/A N/A N/A 0.159±0.00 N/A 0.016±0.00 2.673±0.00 N/A N/A
ENSMUST00000148591 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000088200 ENSMUST00000157575 N/A N/A N/A 3.358±1.25 N/A N/A N/A N/A 5.264±3.47 453.391±0.00 N/A 6.994±0.00 2.171±1.16 N/A

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